Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0235 ATGGATGCGCGTCACTGCTCGCGTAAGCAGTTCATTATAATGGCGGAAGAGATAACCAAGAACGACGTCGGAGTAACCTCCAAAACCACCAGAAGCAGCTCCAGGTTCTGGCCTCGTTGGATTCCCACTTCCACCGATCACATCATCGCTGCCGAGAAGCGCCTTCTTTCCGTCGTCAAGACTGGTTATGTTCAAGAGCATGTTAACATTGGCTCTGGTCCTCCTGGCTCCAAAGTGAGGTGGTTCCGTTCATCCAGCAACGAGCCGCGGTTTATTAACACCGTTACATTTGACAGTAAACCCCATTCTCCAACGCTTGTCATGATTCATGGTTATGCTGCTTCACAGGGGTTCTTTTTTCGCAATTTTGACGCGCTTGCGTCTCGATTTAGAGTCATTGCTGTTGATCAACTTGGATGGGGTGGATCGAGCAGACCTGATTTCACATGCAAAAGCACTGAAGAAACTGAGGCATGGTTTATTGATTCTTTTGAGGAATGGAGAAAAGCCAAAAACTTGAGCAATTTTATACTGCTCGGACATTCTTTTGGTGGTTATGTTGCTGCCAAATATGCGCTCAAGCACCCTGAGCATGTACAACACTTGATTCTGGTTGGATCTGCTGGATTTTCATCTGAATCAGATGCAAAGTCTGAGTGGATAACAAGGTTTCGAGCAACATGGAAGGGGGCAGTTTTGAACCATCTTTGGGAATCAAATTTCACACCTCAGAAACTTGTCAGGGGTTTAGGTCCTTGGGGTCCCAACATAGTCCGCAAGTATACAAGTGCTAGGTTTGGTACACATTCAACTGGGGAAATACTGACTGAAGAGGAATCAACATTGCTGACAGACTATGTTTACCACACATTGGCGGCCAAAGCTAGTGGAGAGCTGTGCTTAAAATATATTTTTTCATTTGGAGCATTTGCTAGGATGCCCCTTCTTCTCAGTGCCTCAGAGTGGAAGGTGCCCACCACTTTCATGTATGGTTTCCAAGACTGGATGAATTATCAAGGTGCCCAAGAAGCTCGCAAGCATATGAAGGTTCCATGCGAAATCATCAGGATTCCTCAGGGTGGGCACTTTGCGTTCATTGACAACCCAACTGCCTTCCATTCAGCTGTTTTTTATGCTTGTCGAAGGTTTCTTACACCTGATCCAGACAATGAATCTCTTCCTAAAGGGCTAACCTCTGCATAG 1203 0.4597 MDARHCSRKQFIIMAEEITKNDVGVTSKTTRSSSRFWPRWIPTSTDHIIAAEKRLLSVVKTGYVQEHVNIGSGPPGSKVRWFRSSSNEPRFINTVTFDSKPHSPTLVMIHGYAASQGFFFRNFDALASRFRVIAVDQLGWGGSSRPDFTCKSTEETEAWFIDSFEEWRKAKNLSNFILLGHSFGGYVAAKYALKHPEHVQHLILVGSAGFSSESDAKSEWITRFRATWKGAVLNHLWESNFTPQKLVRGLGPWGPNIVRKYTSARFGTHSTGEILTEEESTLLTDYVYHTLAAKASGELCLKYIFSFGAFARMPLLLSASEWKVPTTFMYGFQDWMNYQGAQEARKHMKVPCEIIRIPQGGHFAFIDNPTAFHSAVFYACRRFLTPDPDNESLPKGLTSA* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0235 400 PRINTS Alpha/beta hydrolase fold signature 129 144 IPR000073 -
Gso4g0235 400 PRINTS Alpha/beta hydrolase fold signature 178 191 IPR000073 -
Gso4g0235 400 PRINTS Alpha/beta hydrolase fold signature 192 205 IPR000073 -
Gso4g0235 400 PANTHER BNAA01G13630D PROTEIN 37 387 - -
Gso4g0235 400 PRINTS Epoxide hydrolase signature 129 144 IPR000639 GO:0003824
Gso4g0235 400 PRINTS Epoxide hydrolase signature 192 205 IPR000639 GO:0003824
Gso4g0235 400 PRINTS Epoxide hydrolase signature 324 340 IPR000639 GO:0003824
Gso4g0235 400 PRINTS Epoxide hydrolase signature 357 379 IPR000639 GO:0003824
Gso4g0235 400 PANTHER RE40534P-RELATED 37 387 - -
Gso4g0235 400 SUPERFAMILY alpha/beta-Hydrolases 95 376 IPR029058 -
Gso4g0235 400 Pfam alpha/beta hydrolase fold 104 224 IPR000073 -
Gso4g0235 400 Gene3D alpha/beta hydrolase 90 380 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0235 Gso-Chr4 2143775 2148108 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0235 84 211 Acyl Lipid Metabolism Gene Families AT1G64670 33.577 4.08e-11 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0235 - - gmx:100791981 791.186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0235 4 2143775 2148108 Gso4g0235 4 2143775 2148108 ECH
Gso14g1828 14 50673516 50677114 Gso4g0235 4 2143775 2148108 PCT
Gso17g2164 17 41293467 41296703 Gso4g0235 4 2143775 2148108 PCT
Gso4g0235 4 2143775 2148108 Gso14g1828 14 50673516 50677114 PCT
Gso4g0235 4 2143775 2148108 Gso17g2164 17 41293467 41296703 PCT