Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0232 ATGGATGATGCCGGGCATCGTGAAAATGGAAGGCACAAAGCAGCAGATCAATATAAATCTGCTCAGGGACAGTGGTTGATGCAACATCAGCCTTCCATGAAGCAGATTATGGCAATTATGGCTGAAAGAGATGCAGCCATTCAAGAAAGAAATCTGGCCATTTCCGAGAAAAAAGCAGCATATGCTGAGCGCGATATGGCATTCATGCAGCGAGATGCTGCAATTGCTGAACGTAATAATGCAATTTTGGAACGAGATAATGCAATTGCAACTCTTCAGTATCGCGAAACCTCTTTAAGTAGTGGCAGTATGCCATCATGCCCTCCAGGATGCCAAATTTCACGTGGTGTGAAGCATATACATCATCCCCAGCAACAGGTACACCATATACCTAACATGGGTGATGCCTCTTACAGCACACGGGAAATGCACACAACCGATGCCCTCCCTGCAGCCCCCATCCCTTCTGAGGCCGGGAAACCGAGGCGGGCCAAGCGACCAAAGGAACCAAAGTCAGCTTCACCTAATAAGAAGACTTCCAAACCAGCAAAAAAAGTCAAGAAGGAGAGCGAAGACTTGAACAAGGTTATGTTTGGCAAGTCACATGAGTGGAAGAGTGGTCAGGAAATGGTCAATGGAGGTGATGATCTTAACAAGCAGTTAACTGTGTCAAAGGCTGATTGGAAAGGACAGGACTTGGGGTTAAACCAAGTGGCGTATGACGACTCAACCATGCCAGCTCCTGTGTGCTCTTGTACTGGTGTCCTGAGGCAGTGTTACAAATGGGGTAATGGGGGTTGGCAGTCTGCCTGTTGCACAACTACTCTGTCAATGTATCCACTTCCTGCAGTGCCCAACAAGAGACATGCCCGGGTAGGTGGTCGGAAGATGAGTGGGAGTGCTTTCAACAAGCTGCTTAGTCGCCTTGCAGCAGAAGGTCATGATCTGTCAAACCCTGTTGACCTCAAGGACCATTGGGCAAAACATGGAACGAACCGTTACATCACAATAAAGTAG 1017 0.4789 MDDAGHRENGRHKAADQYKSAQGQWLMQHQPSMKQIMAIMAERDAAIQERNLAISEKKAAYAERDMAFMQRDAAIAERNNAILERDNAIATLQYRETSLSSGSMPSCPPGCQISRGVKHIHHPQQQVHHIPNMGDASYSTREMHTTDALPAAPIPSEAGKPRRAKRPKEPKSASPNKKTSKPAKKVKKESEDLNKVMFGKSHEWKSGQEMVNGGDDLNKQLTVSKADWKGQDLGLNQVAYDDSTMPAPVCSCTGVLRQCYKWGNGGWQSACCTTTLSMYPLPAVPNKRHARVGGRKMSGSAFNKLLSRLAAEGHDLSNPVDLKDHWAKHGTNRYITIK* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0232 338 MobiDBLite consensus disorder prediction 147 192 - -
Gso4g0232 338 MobiDBLite consensus disorder prediction 1 15 - -
Gso4g0232 338 PANTHER - 1 207 IPR010409 -
Gso4g0232 338 PANTHER - 213 338 IPR010409 -
Gso4g0232 338 Coils Coil 66 86 - -
Gso4g0232 338 MobiDBLite consensus disorder prediction 1 22 - -
Gso4g0232 338 Pfam GAGA binding protein-like family 1 338 IPR010409 -
Gso4g0232 338 SMART GAGA_bind_2 1 338 IPR010409 -
Gso4g0232 338 MobiDBLite consensus disorder prediction 159 175 - -
Gso4g0232 338 PANTHER PROTEIN BASIC PENTACYSTEINE6 1 207 - -
Gso4g0232 338 PANTHER PROTEIN BASIC PENTACYSTEINE6 213 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0232 Gso-Chr4 2116298 2120438 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0232 66 338 BBR or BPC Transcription factor family AT5G42520 64.828 3.16e-121 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BBR-BPC Gso4g0232 GAGA_bind 7e-111 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0232 - - gmx:100783502 644.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0232 4 2116298 2120438 Gso4g0232 4 2116298 2120438 ECH
Gso4g0232 4 2116298 2120438 Gso6g0209 6 2008255 2012388 GST