Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0219 ATGGGTCAAAGATATGAAAACAATGTTTTCAAGTCTCACATAAGTAATATTGAAGCTGCTCCCGGTATGACCCAAACAGTTCATCTTCCTCCCCCACTTCAAACCGACCCTACCATAAGAGGAAAGCAAAATGGTAAACCAAAAGGTTCAAGAAATGCAAAATCTGCGGCTCACAGACCTTATGCCGATTCCACTAATTCGACTGCGGTTAACAACTGTCGTTATGACAGTTCCTTAGGACTGTTAACCAAGAAATTTGTGAGCTTAATCCAGGATGCTAAGGATGGAACCCTGGATCTAAATAGAACCGCTGAAATCTTGGAGGTTCAGAAAAGGAGAATTTATGACATTACAAATGTTCTTGAAGGGGTAGGACTGATAGAGAAAACATCAAAGAATCATATAAAGTGGAAGGGATGTGATGGGCTTGGACCTCGAGAACTGGAAGACCAAGTTAATAGTTTAAAGGCTGAAGTTGATAGTCTATATGCCGAGGAATGCAAACTTGATGATTGTATAAGGAAAAAGCAGGAGCTTCTAAGAAACCTGGAGGAAAGTGAAAGCTCTCAAAAGTACCTCTTTATAACCAAGGAAGATATTCTTGGCCTTCCATGCTTCCAGAATCAAGAAATTATTGCAATCAAGGCTCCAAAAGCTAGTTCCATCGAGGTTCCTGATCCTGATGAGGAATTAGGTTTTCGGCAAAGGCAGTACAAAATGATTGTTCGAAGTGCCATTGGACCAATATATTTGTACCTCTTGAGGTACTTCTCTGCTGTAACATTGCAACCAAAAGTTTGCAAGGACGACCACAAGTTTGAGGATGATAGTGCCAAACCGATGAAATTAACAAATCCATCATGGAATAGTGATCTCTACAGAAAGAGGGGTGTGGGATTATTAGAAAGCCAAAATGATGAAAATAATCCTTCTGAGCGTTTCAGTTTGCAGGGTTCACAAGCATTTGGAATTCAAGAAATTACTCCCACTGATTTTGAAATGGAAGATGACTATTGGTTTCAATCAGATCCTGGAGTGAGCCAAACAGAATTGGAAGGAGTAGTTGGTTCTGATAGACGTGCTTCAGACGATTAA 1095 0.4018 MGQRYENNVFKSHISNIEAAPGMTQTVHLPPPLQTDPTIRGKQNGKPKGSRNAKSAAHRPYADSTNSTAVNNCRYDSSLGLLTKKFVSLIQDAKDGTLDLNRTAEILEVQKRRIYDITNVLEGVGLIEKTSKNHIKWKGCDGLGPRELEDQVNSLKAEVDSLYAEECKLDDCIRKKQELLRNLEESESSQKYLFITKEDILGLPCFQNQEIIAIKAPKASSIEVPDPDEELGFRQRQYKMIVRSAIGPIYLYLLRYFSAVTLQPKVCKDDHKFEDDSAKPMKLTNPSWNSDLYRKRGVGLLESQNDENNPSERFSLQGSQAFGIQEITPTDFEMEDDYWFQSDPGVSQTELEGVVGSDRRASDD* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0219 364 MobiDBLite consensus disorder prediction 27 67 - -
Gso4g0219 364 PANTHER TRANSCRIPTION FACTOR E2F 2 351 IPR015633 GO:0000978|GO:0006357
Gso4g0219 364 SUPERFAMILY E2F-DP heterodimerization region 150 254 IPR037241 -
Gso4g0219 364 Pfam E2F transcription factor CC-MB domain 155 254 IPR032198 GO:0046983
Gso4g0219 364 CDD E2F_DD 150 254 IPR032198 GO:0046983
Gso4g0219 364 Gene3D - 69 141 IPR036388 -
Gso4g0219 364 PANTHER TRANSCRIPTION FACTOR E2FC 2 351 - -
Gso4g0219 364 SMART E2F_TDP_2 74 139 IPR003316 GO:0005667|GO:0006355
Gso4g0219 364 Pfam E2F/DP family winged-helix DNA-binding domain 76 139 IPR003316 GO:0005667|GO:0006355
Gso4g0219 364 MobiDBLite consensus disorder prediction 27 41 - -
Gso4g0219 364 MobiDBLite consensus disorder prediction 343 364 - -
Gso4g0219 364 SUPERFAMILY "Winged helix" DNA-binding domain 74 137 IPR036390 -
Gso4g0219 364 Gene3D - 146 255 - -
Gso4g0219 364 Coils Coil 169 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0219 Gso-Chr4 1964419 1968270 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0219 39 351 E2F-DP Transcription Factor Family AT1G47870 46.965 4.20e-87 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Gso4g0219 E2F_CC-MB 9e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0219 K06620 - gmx:100811650 701.819
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0219 4 1964419 1968270 Gso4g0219 4 1964419 1968270 ECH
Gso4g0219 4 1964419 1968270 Gso6g0198 6 1864064 1867782 GST