Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0197 ATGGCCTCATGGCCACCCAAACCTACAGAGATTTTTTGTGTGCATGCGAGGGAGAAAGCGATGGCCTCATCGCCATGTGATTGCTGGCCCCATCTCTCTCCTCCTTCTTCCATTGAGCATGTCTGGAACGACATCAAACTCGACTCTCTCTCCAATTCCCCTGTTGACATAGACTTCAACAACAACCACTCTGTCTCTGATTCTTCTTTTCTTAACCTCACTTCCACTTCCTCTTCTGTCTTTCACAAACATGACCATGACCACTCTCTTCTTTCTGTCTCCAACACTTCCTTCGAAGCCTCCGGCTCTAAGAAAACCACCCTGCTAGATCAACGCCATGCGCGTATAATAAAAAATCGAGAATCCGCGGTTCGGTCCAGAGCTAGAAAACAGGCTTATAGAAAAGGCTTGGAAGTTGAAATTGCCCGTTTAACGGAAGAGAATTCCAGACTAAAAAGACAATTGAAAGAGTTGCAGTGCTGCTTGTCCTCCTCTGATAACCCTCCCACTCCCAGAATGGCCGCTCTGTGTAGAACCTCATCATCTCCATTTTGA 555 0.4685 MASWPPKPTEIFCVHAREKAMASSPCDCWPHLSPPSSIEHVWNDIKLDSLSNSPVDIDFNNNHSVSDSSFLNLTSTSSSVFHKHDHDHSLLSVSNTSFEASGSKKTTLLDQRHARIIKNRESAVRSRARKQAYRKGLEVEIARLTEENSRLKRQLKELQCCLSSSDNPPTPRMAALCRTSSSPF* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0197 184 SMART brlzneu 107 171 IPR004827 GO:0003700|GO:0006355
Gso4g0197 184 SUPERFAMILY Leucine zipper domain 112 159 IPR046347 GO:0003700|GO:0006355
Gso4g0197 184 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 109 159 IPR004827 GO:0003700|GO:0006355
Gso4g0197 184 Coils Coil 134 161 - -
Gso4g0197 184 Gene3D - 110 165 - -
Gso4g0197 184 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 17 165 IPR043452 GO:0003700|GO:0045893
Gso4g0197 184 PANTHER PROTEIN FD 17 165 - -
Gso4g0197 184 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 115 129 IPR004827 GO:0003700|GO:0006355
Gso4g0197 184 CDD bZIP_plant_BZIP46 111 165 - -
Gso4g0197 184 Pfam bZIP transcription factor 111 159 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0197 Gso-Chr4 1731085 1733245 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0197 100 184 bZIP Transcription Factor Family AT3G56850 52.941 1.25e-17 76.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Gso4g0197 bZIP_1 1.4e-10 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0197 K14432 - gmx:778127 370.163