Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0196 ATGGTTACCACCACCGTTGATTCTTCCTCTAACCATTACTCACCCACTGCTGCTACTGCTGCCGCTGACACCTCTAATAATTTCCCGCGAAAAAACCTGCCATCCCCGTGGGCCCAGGTAGTTCGCGGTGCTGACGCTGAACCTAACCATCAATCGCCGCCATCTTCTTCCTCTTCCTCGTTCTCGTCCCTCGATTCCATTAATTCTAACGGTCCCGCCGTTCAAACAAGCGATACCACCGTGAAACCTGCGTGGAAGAAACCGGAGTCCAATGGCGTCTCGGAAGTTGGGCCTGTAATGGGCGCTCATTCTTGGCCCGATTTATCTGAGTCCACCAAGCCCACCGCTAAATTGACATCTGACTCCTCTGTTAAGACTGCTGCTGATGAAGAATCACTCACCACCACTCCTCAGGATCCTGTTAATTCAGACTCCCCTCAGAAACAAGCCATTGGTAATGCAAACCCTAGTCCTACTCCTGCAATGAACTATGGTATGGCTAATCGACAAAGATCAATGAAGCAGCGTGGAGGGTCAAATGGCTATAATGTTGGGTCTGGTCCTGTTCAGAACAACTTCTCCGGTGCTACCCAGAATCTTCCTCCACCGCCACCACCGCCCCCCTTTCCTGTGCTTCCGATGCCTCCAAGAACATTTGCCCATGGGATACCAGGGGTTCCAGTTCCTACTCCAAGGGATCCTTACAGGAACAATAACTGGGATGCAAGACCTCCGCATGGGGGTTTTATGCCACCAATGAGTGAGCATCGGAGTCCCTCTCGCAGGGGCAATGCTGGGCACCATCCACGTGGAGACGGTCCCTATCATAACAGTTATGGCAGCAGGCGTGATCAGGATCGTGGAGGTTATGCAAATACTAGAGATGCTCATGTAAATCAACAGAGGATGCCTCCAAGGGGATTAATGAGGCCCCCGCCACCTAATCCTGCTCCATTTATGGGGCCTCAGCCTATGCGACCTTTTGCAAACCCTGCTGGGTTTCCTGAATTCTATTATTTCCCAACGCTACAATTTGAACCCTTTGGGGGCATGCCATTTTTCACACATGCACCTCCTCCTGCAATGTTCTTCCCAGTTGCAGAAACTCCTCTCACCAATACAATAGCCAACCAAATTGATTATTACTTTAGTGATGCTAATTTAGTGAAGGATGAGTATTTAAGGTCCAACATGGATGAACAGGGATGGGTTCCTATTACTCTGATTGCAAGCTTCCCAAGGGTTAGAAGTTTGACAAGCAACATTAAGTTGATATTGGATTCATTGAGAACTTCCACTGTCGTGGAAGTGCAGGGGGACAAGTTAAGGAGGTGCAATGAGTGGATGAAGTGGCTTCCCTCCGCCCAGCTTCGGGCCAACTCTGGTTCAATATCCCCTAGCGGATCAAGTTCTAATAACCTAGCAGCTGATTTTGAAAAGATCACAGTGGATGAAGCTATTTCACATAAAGTTAACACTGAGCCTACCACAAATGAAGATGCTGCAGGAGAGTCCTCAACTCAGTCCCAAGTCCCAAATGATGCTACTGTGAGCAGCAATTAA 1563 0.4901 MVTTTVDSSSNHYSPTAATAAADTSNNFPRKNLPSPWAQVVRGADAEPNHQSPPSSSSSSFSSLDSINSNGPAVQTSDTTVKPAWKKPESNGVSEVGPVMGAHSWPDLSESTKPTAKLTSDSSVKTAADEESLTTTPQDPVNSDSPQKQAIGNANPSPTPAMNYGMANRQRSMKQRGGSNGYNVGSGPVQNNFSGATQNLPPPPPPPPFPVLPMPPRTFAHGIPGVPVPTPRDPYRNNNWDARPPHGGFMPPMSEHRSPSRRGNAGHHPRGDGPYHNSYGSRRDQDRGGYANTRDAHVNQQRMPPRGLMRPPPPNPAPFMGPQPMRPFANPAGFPEFYYFPTLQFEPFGGMPFFTHAPPPAMFFPVAETPLTNTIANQIDYYFSDANLVKDEYLRSNMDEQGWVPITLIASFPRVRSLTSNIKLILDSLRTSTVVEVQGDKLRRCNEWMKWLPSAQLRANSGSISPSGSSSNNLAADFEKITVDEAISHKVNTEPTTNEDAAGESSTQSQVPNDATVSSN* 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0196 520 Gene3D - 365 453 IPR036388 -
Gso4g0196 520 PANTHER LUPUS LA PROTEIN-RELATED 6 517 IPR045180 -
Gso4g0196 520 MobiDBLite consensus disorder prediction 1 33 - -
Gso4g0196 520 MobiDBLite consensus disorder prediction 486 520 - -
Gso4g0196 520 SUPERFAMILY "Winged helix" DNA-binding domain 362 453 IPR036390 -
Gso4g0196 520 MobiDBLite consensus disorder prediction 489 520 - -
Gso4g0196 520 Pfam La domain 375 430 IPR006630 -
Gso4g0196 520 PANTHER LA-RELATED PROTEIN 1B 6 517 - -
Gso4g0196 520 MobiDBLite consensus disorder prediction 1 216 - -
Gso4g0196 520 MobiDBLite consensus disorder prediction 198 216 - -
Gso4g0196 520 ProSiteProfiles La-type HTH domain profile. 365 454 IPR006630 -
Gso4g0196 520 MobiDBLite consensus disorder prediction 49 84 - -
Gso4g0196 520 CDD LAM 375 444 - -
Gso4g0196 520 MobiDBLite consensus disorder prediction 277 291 - -
Gso4g0196 520 MobiDBLite consensus disorder prediction 108 197 - -
Gso4g0196 520 MobiDBLite consensus disorder prediction 228 291 - -
Gso4g0196 520 SMART la 369 445 IPR006630 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0196 Gso-Chr4 1723409 1729107 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0196 K18757 - gmx:100775279 976.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0196 4 1723409 1729107 Gso4g0196 4 1723409 1729107 ECH
Gso4g0196 4 1723409 1729107 Gso6g0177 6 1650636 1655373 GST
Gso14g1869 14 51117224 51121678 Gso4g0196 4 1723409 1729107 PCT
Gso17g2206 17 41777344 41781685 Gso4g0196 4 1723409 1729107 PCT
Gso4g0196 4 1723409 1729107 Gso14g1869 14 51117224 51121678 PCT
Gso4g0196 4 1723409 1729107 Gso17g2206 17 41777344 41781685 PCT