Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0193 ATGGCTAAAGTCATGTTTGGTTTGGTCTGCAGCTTCCTCGTATTATGCTGTTTCACAATCAACACTAGCGCCTTCTCACCTTCTGGATGGACCAATGCCCATGCCACTTTTTATGGAGGTAGCGATGCCTCGGGGACCATGGGAGGAGCTTGTGGGTATGGGAATCTGTATTCGACAGGGTACGGAACTGATACAGCGGCATTAAGTACTGCCATATTTAACGATGGAGCTTCATGTGGGGAGTGTTACAAAATCATATGCGATTATCAAACAGATCCCAGATGGTGCTTGAAAGGAGCATCAGTAACCATAACTGCCACAAACTTCTGCCCTCCCAATTTTGCTCTTCCCAACAACAACGGAGGATGGTGCAACCCACCTCTCAAACATTTCGACATGGCTCAACCCGCATGGGAAAAGATTGGTATCTATCGAGGAGGGATCGTGCCAGTGTTGTTCCAAAGGGTTCCATGCGTGAAGAAGGGAGGGATTAGGTTCAGTGTGAATGGGAGAGACTACTTTGAGCTTGTATTGATCAGCAACGTGGGAGGGGCTGGATCTATTCAATCTGTGTCTATCAAAGGCTCAAAAACTGGATGGATGACTATGTCAAGAAACTGGGGAGCTAATTGGCAATCCAATGCGTATTTGAATGGTCAATCTTTGTCCTTCAGGGTCACAACCACCGATGGTGTAACTAGGTTTTTCCAAGACGTTGTTCCATCAAATTGGGCTTTTGGCCAGACTTTCCCTACTAGTGTCCAGTTTTAA 771 0.4643 MAKVMFGLVCSFLVLCCFTINTSAFSPSGWTNAHATFYGGSDASGTMGGACGYGNLYSTGYGTDTAALSTAIFNDGASCGECYKIICDYQTDPRWCLKGASVTITATNFCPPNFALPNNNGGWCNPPLKHFDMAQPAWEKIGIYRGGIVPVLFQRVPCVKKGGIRFSVNGRDYFELVLISNVGGAGSIQSVSIKGSKTGWMTMSRNWGANWQSNAYLNGQSLSFRVTTTDGVTRFFQDVVPSNWAFGQTFPTSVQF* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0193 256 PRINTS Expansin/Lol pI family signature 29 44 IPR007118 GO:0005576
Gso4g0193 256 PRINTS Expansin/Lol pI family signature 47 65 IPR007118 GO:0005576
Gso4g0193 256 PRINTS Expansin/Lol pI family signature 69 87 IPR007118 GO:0005576
Gso4g0193 256 PRINTS Expansin/Lol pI family signature 146 162 IPR007118 GO:0005576
Gso4g0193 256 PRINTS Expansin/Lol pI family signature 200 214 IPR007118 GO:0005576
Gso4g0193 256 PRINTS Expansin/Lol pI family signature 238 252 IPR007118 GO:0005576
Gso4g0193 256 SUPERFAMILY PHL pollen allergen 160 251 IPR036749 -
Gso4g0193 256 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 48 163 IPR007112 -
Gso4g0193 256 Pfam Lytic transglycolase 65 152 IPR009009 -
Gso4g0193 256 Pfam Expansin C-terminal domain 164 241 IPR007117 -
Gso4g0193 256 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 173 252 IPR007117 -
Gso4g0193 256 PANTHER EXPANSIN 12 256 - -
Gso4g0193 256 SMART dpbb_1 65 153 IPR007112 -
Gso4g0193 256 Gene3D - 163 256 IPR036749 -
Gso4g0193 256 Gene3D - 16 158 IPR036908 -
Gso4g0193 256 SUPERFAMILY Barwin-like endoglucanases 29 181 IPR036908 -
Gso4g0193 256 PANTHER EXPANSIN-A15 12 256 IPR002963 GO:0009664
Gso4g0193 256 PRINTS Expansin signature 60 74 IPR002963 GO:0009664
Gso4g0193 256 PRINTS Expansin signature 89 100 IPR002963 GO:0009664
Gso4g0193 256 PRINTS Expansin signature 102 112 IPR002963 GO:0009664
Gso4g0193 256 PRINTS Expansin signature 121 138 IPR002963 GO:0009664
Gso4g0193 256 PRINTS Expansin signature 138 151 IPR002963 GO:0009664
Gso4g0193 256 PRINTS Expansin signature 162 174 IPR002963 GO:0009664
Gso4g0193 256 PRINTS Expansin signature 174 195 IPR002963 GO:0009664
Gso4g0193 256 PRINTS Expansin signature 209 230 IPR002963 GO:0009664
Gso4g0193 256 PRINTS Expansin signature 238 254 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0193 Gso-Chr4 1706420 1708331 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0193 65 256 Expansin Gene Family AT1G20190 82.292 1.61e-121 342
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0193 - - gmx:100527629 548.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0193 4 1706420 1708331 Gso4g0193 4 1706420 1708331 ECH
Gso4g0193 4 1706420 1708331 Gso6g0175 6 1639989 1641269 GST
Gso14g1873 14 51154730 51156693 Gso4g0193 4 1706420 1708331 PCT
Gso17g2210 17 41805155 41807115 Gso4g0193 4 1706420 1708331 PCT
Gso4g0193 4 1706420 1708331 Gso14g1873 14 51154730 51156693 PCT
Gso4g0193 4 1706420 1708331 Gso17g2210 17 41805155 41807115 PCT