Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0192 ATGACTCAAGATCTCGAGATGAGGGATCGCTCAACGCCTTCCAACTCTGTTTCTTTGCCTGCTCCATCTACTTTGCAGCATTTGAAGGAGATAGCGTCTCTTATCGAGACCGGTTCGTACTCGAAGGAAGTTCGTAGAATTGCTCGCGCTGTTCGCCTTACAATTGCGTTGAGGCGGAAATTGACAGCATCCGCTATCTCTTCTTTTCTCGACCTTGTTCTCACTCCAGGCTCTGAAGTTCACGCCAAATTGTCTGCGTATCTTCCCAAGGAGGATGATCATGAGATGGAAGTGGACGCCGCAACATCTGCTATTCAAACCCCAGCCAAACACTTGTTGCCTGAGCTAGAAATCTACTGTTACCTGCTTGTACTACTTTTTCTGATTGATCAGAAAAAATACAATGAGGCCAAAGCTTGTTCCTCGGCTAGCATTGTTTGGCTTAAGAACACAAACAGGAGAACTGTTGATGTTATTGCATCCAGACTGTATTTTTACTATTCGTATAGCTATGAGCTTACAGGAGATCTTGCTGAAATTCGGGGCAACCTCCTTGCATTGCACCGATTTGCGACTCTCCGCCATGATGAGCTGGGACAGGAAACACTTCTTAATTTGTTACTTCGAAACTACCTTCACTACAACCTATATGATCAGGCTGAGAAGTTGAGGTCCAAGGCTCCTCGATTTGAAGCACATTCAAACCAGCAGTTTTGTCGTTATCTCTTCTACCTTGGGAAAATTCGGACAATTCAGCTGGAGTATACAGATGCAAAAGAGTCTCTCCTGCAGGCCGCCCGGAAAGCTCCTGTTGCTGCAAGGGGTTTTCGAATTCAATGTAACAAGTGGGCTGTGATAGTGCGTTTACTGTTGGGAGAAATACCTGAGCGGACTGTCTTCATGCAGAAAGGAATGGAGAAAGCTTTAAGGCCTTACTTTGAGCTTACAAATGCTGTGCGGATTGGAGACTTGGAACTGTTTAGGAATATTGCAGACAAGTTTGCCACTACCTTTAATGCAGACAGAACCCATAATTTGATTGTTCGTTTGCGGCATAATGTCATCAGGACTGGTTTACGCAACATCAGCATCTCCTATTCTCGCATCTCTCTAGCTGATGTTGCTAAAAAACTGAGGCTGAACTCTGCAAATCCTGTTGCAGATGCTGAGAGCATTGTATCAAAGGCTATTCGTGATGGTGCAATTGATGCTACATTGGATCATGCCAATGGTTGGATGGTGTCCAAAGAAACTGGAGATATTTACTCCACAAATGAGCCACAGTCAGCCTTCAATTCTCGGATTGCTTTCTGTCTTAACATGCACAATGAGGCGGTTCGAGCTCTTCGTTTTCCACCAAACACACACAAAGAGAAGGAAAGTGCTGAAAAGAGAAGAGAGAGACAACAGCAAGAGCAAGAGCTGGCTAAGCATATTGCAGAGGAGGATGACGATGATTTTTGA 1464 0.4474 MTQDLEMRDRSTPSNSVSLPAPSTLQHLKEIASLIETGSYSKEVRRIARAVRLTIALRRKLTASAISSFLDLVLTPGSEVHAKLSAYLPKEDDHEMEVDAATSAIQTPAKHLLPELEIYCYLLVLLFLIDQKKYNEAKACSSASIVWLKNTNRRTVDVIASRLYFYYSYSYELTGDLAEIRGNLLALHRFATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAARGFRIQCNKWAVIVRLLLGEIPERTVFMQKGMEKALRPYFELTNAVRIGDLELFRNIADKFATTFNADRTHNLIVRLRHNVIRTGLRNISISYSRISLADVAKKLRLNSANPVADAESIVSKAIRDGAIDATLDHANGWMVSKETGDIYSTNEPQSAFNSRIAFCLNMHNEAVRALRFPPNTHKEKESAEKRRERQQQEQELAKHIAEEDDDDF* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0192 487 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 345 438 - -
Gso4g0192 487 Coils Coil 454 481 - -
Gso4g0192 487 MobiDBLite consensus disorder prediction 1 20 - -
Gso4g0192 487 ProSiteProfiles PCI domain profile. 239 420 IPR000717 -
Gso4g0192 487 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3 1 487 - -
Gso4g0192 487 Pfam Proteasome regulatory subunit C-terminal 420 486 IPR013586 GO:0000502|GO:0030234|GO:0042176
Gso4g0192 487 SUPERFAMILY "Winged helix" DNA-binding domain 346 421 IPR036390 -
Gso4g0192 487 Gene3D - 129 443 - -
Gso4g0192 487 MobiDBLite consensus disorder prediction 452 487 - -
Gso4g0192 487 Pfam PCI domain 311 416 IPR000717 -
Gso4g0192 487 MobiDBLite consensus disorder prediction 452 480 - -
Gso4g0192 487 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3/COP9 SIGNALOSOME COMPLEX SUBUNIT 3 1 487 - -
Gso4g0192 487 SMART PINT_4 345 438 IPR000717 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0192 Gso-Chr4 1693912 1697242 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0192 K03033 - gmx:100787034 922.539
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0192 4 1693912 1697242 Gso4g0192 4 1693912 1697242 ECH
Gso4g0192 4 1693912 1697242 Gso6g0173 6 1629840 1633230 GST
Gso14g1874 14 51157800 51163160 Gso4g0192 4 1693912 1697242 PCT
Gso17g2211 17 41808284 41813620 Gso4g0192 4 1693912 1697242 PCT
Gso4g0192 4 1693912 1697242 Gso14g1874 14 51157800 51163160 PCT
Gso4g0192 4 1693912 1697242 Gso17g2211 17 41808284 41813620 PCT