Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0189 ATGCTCGATTCGGTCCTTCTGGCGCTTTTCTTGCCGTGCCTTGGCATGAGCGGGGTTTTTATCGTCTACATGTGCCTTCTTTGGTACGCCACCACCCGGCACCACCAGCAACCCCCCATCGACGGGCAACCGGTGAAGCCCGTCGCTGACAAGGGTCTATCCGCTCTGGAGTTGGAGAAGCTTCCAAGAGTCACCGGCAAAGAACTCGTCTTGGGCAACGAATGCGCCGTCTGCCTCGACGAGATCGAGAGCGAGCAACCGGCTAGACTGGTCCCCGGTTGCAACCATGGTTTTCATGTCCATTGCGCTGACACCTGGCTCTCCAAGCACCCTCTTTGCCCCGTTTGCAGGACCAAGCTGGACCCTCAAATCTTCACTTCCCAAAGCCCTTGCTGA 396 0.5783 MLDSVLLALFLPCLGMSGVFIVYMCLLWYATTRHHQQPPIDGQPVKPVADKGLSALELEKLPRVTGKELVLGNECAVCLDEIESEQPARLVPGCNHGFHVHCADTWLSKHPLCPVCRTKLDPQIFTSQSPC* 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0189 131 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL23 1 128 - -
Gso4g0189 131 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 40 123 IPR013083 -
Gso4g0189 131 ProSiteProfiles Zinc finger RING-type profile. 75 117 IPR001841 -
Gso4g0189 131 Pfam Ring finger domain 73 117 IPR001841 -
Gso4g0189 131 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 1 128 - -
Gso4g0189 131 SUPERFAMILY RING/U-box 59 123 - -
Gso4g0189 131 SMART ring_2 75 116 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0189 Gso-Chr4 1673774 1675141 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0189 1 131 C3H Transcription Factor Family AT5G42200 56.204 9.81e-49 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0189 K19037 - gmx:100776003 282.337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0189 4 1673774 1675141 Gso4g0189 4 1673774 1675141 ECH
Gso4g0189 4 1673774 1675141 Gso6g0172 6 1617637 1618670 GST
Gso14g1876 14 51183897 51185032 Gso4g0189 4 1673774 1675141 PCT
Gso17g2213 17 41822867 41823586 Gso4g0189 4 1673774 1675141 PCT
Gso4g0189 4 1673774 1675141 Gso14g1876 14 51183897 51185032 PCT
Gso4g0189 4 1673774 1675141 Gso17g2213 17 41822867 41823586 PCT