Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0182 ATGCCTCACAATCCGCACACCGTGGTCTACCTCCACGGCACCCTCGATTTGGTAATCGAGGAGGCTCGCTTCCTTCCGAACATGGACATGCTCTCCGAGCGCGTGCGGAGGTTCTTCTCCGCTCTCAACACCTGCAGCGCCTCCATCTCCGGGAAACGGAAGCAGCAACAAGCGCGCCACCGCCACCGCAAAATCATCACCAGCGATCCTTACGTCACCGTGTGCCTCGCCGGGGCCACCGTGGCGCGCACCCGCGTGATCTCGAACTCGCAGGACCCGACGTGGAACGAGCACTTCAAGATCCCGCTCGCGCACCCGGCCTCGCAGGTCGAGTTCTACGTCAAGGACAACGACATGTTCGGCGCCGACCTGATTGGAGTCGCCACCGTCTCCGCCGAGAGGATCCTCTCCGGCGAAGCCATCAGCGACTGGTTCCCGATCATAGGCACGTTCGGGAAGCCGCCGAAGCCTGACTGCGCGGTGCGGCTGGCGATGAAATTCACGAGGTGCGAGGACAGTCCTATGTACCGGGCCGGCACCGAATCGGATCCGGACCGGTTCGTTGTTCGGGAATCGTATTTTCCGGTTCGGCGCGGAGGTTCGGTGACGCTGTATCAGGACGCGCACGTGCCTGATTCGATGTTGCCGGAGGTTGAGTTAGAGGACGGGGTTGTGTTTGAGCACGGGAAGTGCTGGGAAGATATATGCCACGCGATATTGGAAGCGCATCATTTGGTTTACATTGTGGGTTGGTCCATCTACCACAAGGTGAAGTTGGTGAGAGAGCCTACAAAACCCTTACCTAGCGGTGGTAACTTGAGTCTCGGGGAGTTGCTCAAGTACAAGTCGCAAGAAGGTTTGCGAGTTTTACTATTGGTTTGGGATGATAAGACTTCGCACAGCAAGTTTTTCATTAACACGAGTGGAGTAATGCAAACACATGATGAAGAAACTCGAAAGTTTTTCAAGCATTCTTCAGTTAGATGTTTGCTGTCACCAAGATATGCCAGCAGTAAGCTTAGCATTTTCAGGCAGCAGGTTGTTGGCACTCTCTTTACACATCATCAGAAATGTGTGATTGTGGATACTCAAGCACACGGCAATAATCGGAAGATAACTGCATTTATAGGTGGTCTAGATCTTTGTGATGGCCGGTATGATACACCCGAGCATAGAATTTTACGTGATATCGACACTGTTTATCAGGACGATTATCATAATCCCACATTTTGTGCGGGAACCAAGGGTCCAAGGCAACCATGGCATGATTTACATTGCAAAATTGAAGGCCCAGCTGCATATGATATACTCACTAATTTTGAGCAGCGCTGGAGAAAAGCCACCAGATGGTCTGAGCTGGGTCGAAAACTCAAGAGAGTATCTCACTGGAACGATGATTCTTTGATCAAGTTAGAACGCATCTCTTGGATTCTTAGTCCTTCGGAATCAACTCCAATTGATGATCCTGAACTATGGGTTTCAAAGGAAGACGATCCTGAAAATTGGCATGTTCAGGTTTTTCGATCCATAGATTCTGGTTCTTTGAAGGGATTTCCTAAGGATGTAGTAGTTGCCGAGACTCAGAACCTTGTTTGTGCAAAAAATTTGGTCATAGACAAGAGTATTCAAACAGCATATATACATGCGATCAGATCTGCTCAACATTTTATTTATATCGAGAATCAATATTTTATTGGATCATCCTTTGCTTGGCCAGCTTACAAAGAAGCAGGTGCTGATAACCTAATTCCTGTGGAGTTGGCACTGAAGATAGTCAGTAAGATAAGATCCAAGGAGAGATTTGCAGTTTATATTGTCATCCCAATGTGGCCTGAAGGTTCCCCTTCTTCTACTTCAGTGCAAGAGATACTCTTTTGGCAGGGACAAACAATGAAAATGATGTATGAAATCATTGCTCGGGAGTTAAAATCTATGCAGCTTGATAGTCATCCACAAGATTACCTCAATTTTTACTGTCTTGGGAACCGAGAGCAGTTGACAACTGAAGTTTCGAGTTCAAGTAGTTCACCTTCAGATAATGGCGAAACGGTTTCAGCCTCACAAAAGTTCCGACGGTTTATGATTTATGTACATGCCAAAGGAATGATTGTGGATGATGAATATGTAATTCTTGGGTCTGCCAATATAAATCAACGATCTTTGGCTGGATCCAGAGATACTGAGATAGCAATGGGTGCATATCAACCCCATCATACATGGAGTCAAAAAAAGGGACATCCACATGGTCAGGTATATGGGTATAGAATGTCTTTGTGGGCAGAACACACGGGGACCATAGAAGCTTGCTTCAAGGAGCCTGAATGTTTGGAGTGTGTGAAAAGTGTGAACAAGATTGCTGAAGACAACTGGAAGAAGTACACAGCTGATGATTATAGTCCATTGCAAGGGCACCTAATGAAGTATCCTGTGTCTGTAAATGCCAATGGGAAGGTAAAGTCCTTACCTGGATTTGAGTCTTTCCCAGATGTCGGTGGCAAGGTGCTTGGCTCCCGGTCTACCCTTCCTGATGCTCTAACTACGTAA 2544 0.4756 MPHNPHTVVYLHGTLDLVIEEARFLPNMDMLSERVRRFFSALNTCSASISGKRKQQQARHRHRKIITSDPYVTVCLAGATVARTRVISNSQDPTWNEHFKIPLAHPASQVEFYVKDNDMFGADLIGVATVSAERILSGEAISDWFPIIGTFGKPPKPDCAVRLAMKFTRCEDSPMYRAGTESDPDRFVVRESYFPVRRGGSVTLYQDAHVPDSMLPEVELEDGVVFEHGKCWEDICHAILEAHHLVYIVGWSIYHKVKLVREPTKPLPSGGNLSLGELLKYKSQEGLRVLLLVWDDKTSHSKFFINTSGVMQTHDEETRKFFKHSSVRCLLSPRYASSKLSIFRQQVVGTLFTHHQKCVIVDTQAHGNNRKITAFIGGLDLCDGRYDTPEHRILRDIDTVYQDDYHNPTFCAGTKGPRQPWHDLHCKIEGPAAYDILTNFEQRWRKATRWSELGRKLKRVSHWNDDSLIKLERISWILSPSESTPIDDPELWVSKEDDPENWHVQVFRSIDSGSLKGFPKDVVVAETQNLVCAKNLVIDKSIQTAYIHAIRSAQHFIYIENQYFIGSSFAWPAYKEAGADNLIPVELALKIVSKIRSKERFAVYIVIPMWPEGSPSSTSVQEILFWQGQTMKMMYEIIARELKSMQLDSHPQDYLNFYCLGNREQLTTEVSSSSSSPSDNGETVSASQKFRRFMIYVHAKGMIVDDEYVILGSANINQRSLAGSRDTEIAMGAYQPHHTWSQKKGHPHGQVYGYRMSLWAEHTGTIEACFKEPECLECVKSVNKIAEDNWKKYTADDYSPLQGHLMKYPVSVNANGKVKSLPGFESFPDVGGKVLGSRSTLPDALTT* 848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0182 847 CDD C2_plant_PLD 8 168 - -
Gso4g0182 847 SUPERFAMILY Phospholipase D/nuclease 539 778 - -
Gso4g0182 847 SMART C2_3c 14 144 IPR000008 -
Gso4g0182 847 Gene3D Endonuclease Chain A 517 743 - -
Gso4g0182 847 ProSiteProfiles C2 domain profile. 1 145 IPR000008 -
Gso4g0182 847 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 350 385 IPR001736 GO:0003824
Gso4g0182 847 SMART pld_4 693 720 IPR001736 GO:0003824
Gso4g0182 847 SMART pld_4 350 385 IPR001736 GO:0003824
Gso4g0182 847 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 693 720 IPR001736 GO:0003824
Gso4g0182 847 Pfam C2 domain 13 147 IPR000008 -
Gso4g0182 847 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 10 150 IPR035892 -
Gso4g0182 847 SUPERFAMILY Phospholipase D/nuclease 187 456 - -
Gso4g0182 847 Gene3D Endonuclease Chain A 225 469 - -
Gso4g0182 847 PANTHER PHOSPHOLIPASE D 6 846 - -
Gso4g0182 847 Pfam Phospholipase D C terminal 768 837 IPR024632 -
Gso4g0182 847 Gene3D C2 domain 11 175 IPR035892 -
Gso4g0182 847 Pfam PLD-like domain 547 729 IPR025202 -
Gso4g0182 847 PIRSF PLD_plant 2 847 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Gso4g0182 847 Pfam Phospholipase D Active site motif 351 385 IPR001736 GO:0003824
Gso4g0182 847 PANTHER PHOSPHOLIPASE D 6 846 IPR015679 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0182 Gso-Chr4 1605511 1612823 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0182 8 676 Phospholipase D Gene Family (Wang group) AT4G35790 66.910 0.0 964
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0182 4 1605511 1612823 Gso4g0182 4 1605511 1612823 ECH
Gso4g0182 4 1605511 1612823 Gso6g0165 6 1547433 1555636 GST