Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0179 ATGGGAGATCATACAGAATCTTGCAATAGCGGAATTTTCAATTCTGGATGGAACCTAAGTCCAAAACAGAGGCAGAAGGTTGGAGTTTATAACGAGGTTCTATGTAGACTTAGGGAATTGAATGTCCCAGAGGCTATGGTTCCTGGTTTTGAGGATGAGCTTTGGGCACACTTCTATCGCCTTCCTTCTAGGTATGCATTGGACATGAATGTGGAGAGGGCACAAGATGTTCTTATGCATAAAAGGTTACTGGACATCGCACGAGCCCCAACTACAGCATTCGGGCCTGCAGTTGAAGTCCGTCTTGTACAGGTTGGTTCTGCTTCAGCTGGTCATTCTAGTAAATCCCTTCATTCAAACTCACAAAGTAAAGTTTGTCCTGAAGATTCTGGTATTCCAGGCAACATGAGCTTCCATCCTCCACCGGCTTTGGGTTCGTCAACTAATATGGAACTTGCTCTTGGCGAGAGCCAGTTACAAGTTCGAGACAGGGATAACTATTTGAATTTTTATGCACATTATGCCCGGCCCATACATGAAATCACAATTTCAACAAATGACAAGCCAAAACTTCTCTCTCAGTTGACATCCTTACTATCTGAGACTGGGTTGGACATTCAAGAAGCACATGCTTTTTCGACAATAGATGGCTATTCATTGGATGTTTTTGTTGTTGGTGGTTGGGCGGTTGAGGAAACAGAGAAGTTAAAATATGAACTAGCTAAGAAAGTTCAGAGGCTCCAGCAACCTCAATTGAAAAAAAATGGGAGTCTTCCTACTGCAAAGCAAGAGCAAACCAGGATGAACTTTATCTGGAGAATTGGTGCTGGGTGTTTAAGATATGAAAATAAAATTGCATCTGGACCTTTCAGTGATTTGTATAAAGGTACGTTCTGCAATCAAGATGTAGCCATCAAAGTCCTTAAACATGAGAGTTTGAATGACAATATGCTAAGAGAGTTTGCTCAGGAAGTGTATATCCTAAGTAAAATTCAGCACAAGAATGTTGTCAAATTTGTTGGCGCTTGTACAAAACCCCCAAACCTTTACCTTGTCACAGAATACATGTCTGGTGGAAGTATGTTTGACTTTTTGCATAAACAGAAGACTGTCCTTGCTCTTCCATCTTTACTCAAAGTAGCCATTGATGTTTCCGAAGGAATGAAATATTTGCATCAGAATGATATCATACATCGGGACCTTAAAGCAGCTAATCTTTTGATAGATGAGAATGGGGTAGTTAAGGTTTCCGATTTTGGTGTAGCTAGAGTGCATGATCAGTCTGGTATCATGACTGCAGAAACTGGAACTTACCGGTGGATGGCTCCGGAGGTTATTGAACATAAACCATATGATCAGAAAGCCGATGTCTTTAGCTTTGGCATTGTTCTTTGGGAAATGCTCACAGGAAAGCTTCCTTATGAGCATTTGTCCCCATTGCAAGCAGCAGTTGGAGTGATCCAGAAGGGTTTAAGGCCTCAAATTCCAAGGCATACTCATCCAAAGTTAGTGGAATTGCTTCACTGGTGCTGGCACCAAGATTCATCTTTGAGACCCCACTTCTCAGAAATTCAAGAATTTCTGCTGCGTGTGACCTAG 1599 0.4178 MGDHTESCNSGIFNSGWNLSPKQRQKVGVYNEVLCRLRELNVPEAMVPGFEDELWAHFYRLPSRYALDMNVERAQDVLMHKRLLDIARAPTTAFGPAVEVRLVQVGSASAGHSSKSLHSNSQSKVCPEDSGIPGNMSFHPPPALGSSTNMELALGESQLQVRDRDNYLNFYAHYARPIHEITISTNDKPKLLSQLTSLLSETGLDIQEAHAFSTIDGYSLDVFVVGGWAVEETEKLKYELAKKVQRLQQPQLKKNGSLPTAKQEQTRMNFIWRIGAGCLRYENKIASGPFSDLYKGTFCNQDVAIKVLKHESLNDNMLREFAQEVYILSKIQHKNVVKFVGACTKPPNLYLVTEYMSGGSMFDFLHKQKTVLALPSLLKVAIDVSEGMKYLHQNDIIHRDLKAANLLIDENGVVKVSDFGVARVHDQSGIMTAETGTYRWMAPEVIEHKPYDQKADVFSFGIVLWEMLTGKLPYEHLSPLQAAVGVIQKGLRPQIPRHTHPKLVELLHWCWHQDSSLRPHFSEIQEFLLRVT* 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0179 532 Gene3D Transferase(Phosphotransferase) domain 1 358 532 - -
Gso4g0179 532 ProSitePatterns Serine/Threonine protein kinases active-site signature. 396 408 IPR008271 GO:0004672|GO:0006468
Gso4g0179 532 PRINTS Tyrosine kinase catalytic domain signature 353 366 IPR001245 GO:0004672|GO:0006468
Gso4g0179 532 PRINTS Tyrosine kinase catalytic domain signature 390 408 IPR001245 GO:0004672|GO:0006468
Gso4g0179 532 PRINTS Tyrosine kinase catalytic domain signature 436 446 IPR001245 GO:0004672|GO:0006468
Gso4g0179 532 PRINTS Tyrosine kinase catalytic domain signature 455 477 IPR001245 GO:0004672|GO:0006468
Gso4g0179 532 PRINTS Tyrosine kinase catalytic domain signature 499 521 IPR001245 GO:0004672|GO:0006468
Gso4g0179 532 SUPERFAMILY ACT-like 178 247 IPR045865 -
Gso4g0179 532 SUPERFAMILY Protein kinase-like (PK-like) 259 528 IPR011009 -
Gso4g0179 532 ProSiteProfiles ACT domain profile. 180 255 IPR002912 -
Gso4g0179 532 ProSiteProfiles Protein kinase domain profile. 279 528 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso4g0179 532 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 9 532 - -
Gso4g0179 532 SMART serkin_6 279 528 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso4g0179 532 PANTHER ACT-LIKE TYROSINE KINASE FAMILY PROTEIN 9 532 - -
Gso4g0179 532 CDD STKc_MAP3K-like 285 528 - -
Gso4g0179 532 Pfam Protein tyrosine and serine/threonine kinase 280 528 IPR001245 GO:0004672|GO:0006468
Gso4g0179 532 Gene3D Phosphorylase Kinase; domain 1 274 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0179 Gso-Chr4 1582328 1591028 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0179 6 528 MAP Kinase Kinase Kinase AT4G35780 56.691 0.0 592
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Gso4g0179 PK_Tyr_Ser-Thr 5.6e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0179 - - gmx:100818047 1051.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0179 4 1582328 1591028 Gso4g0179 4 1582328 1591028 ECH