Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0178 ATGTCATCGGCGGCGAGAACTCCCGGTGGCGAGGAGGGAAAGCACTACCCTGCTCCACTCGCCCCTCACGAGGGCGTCGTGAAGGACTCCACTCTCTTCTGGGACACTCTAAGGCGCTTTCACTTTGTTATGGGTACCAAATTTATGATTCCTGTGATTGGAGGGAAGGAGCTGGATTTGCACGTTCTTTACGTGGAAGTTACGAGAAGAAGTGGCTACGAGAAGGTAGTTGCAGAGAAGAAGTGGAGGGAAGTTGGTAGTGTTTTCAAGTTCGCAGCTACCACCACCAGCGCTTCTTTTGTACTCAGGAAACACTACTTTAGTCTTCTTTATCATTATGAACAAGTTCACTTCTTTAAAGCTCGGGGTCCTATCTACACTCCATCAGCAGATGCATTTTCCGGCAACAGCCCTTCGTGGAGACCTGAATTAGCTATTGTGGAATATTCGCCTAAGCCTATGGATAATAGTCCTGAATCTCGTGCTGAAGATACTTCATGCCTTTCAGGAAATGGAACCATCGAGGGAAAATTTGACTGTGGTTATTTAGTGTCCGTGAAGCTTGGTTCGGAGGTTCTTAGAGGGGTGCTTTACCATCCTGAGCAATTGGTTCCTCCACCATCGATTCCAAAACATGAGAGTGCCATTGTACCAATCAACCGCAAACCTCACCGTTCTGGTCGTAGGAAGAAAAACAAAAGAAGGTGGGACCCCAATTATCCAAAGCCGAATAGGAGTGGCTATAACTTCTTCTTTGCTGAAAAGCATTACACTCTCAAAACTCTCTACCCAAACAGAGAAAGGGAGTTTACCAAAATGATTGGCCAGTCATGGAACAGTCTTAGCCCAGAAGAAAGAATGGTTTATCAGAACATTGGCTTAAGAGACAAAGAAAGGTACAAGAGAGAATTGACGGAGTACAAAGAGAAGATGAAGCTTAGGCAGACCTCAGAAGTTGGACGTCCATAG 969 0.4592 MSSAARTPGGEEGKHYPAPLAPHEGVVKDSTLFWDTLRRFHFVMGTKFMIPVIGGKELDLHVLYVEVTRRSGYEKVVAEKKWREVGSVFKFAATTTSASFVLRKHYFSLLYHYEQVHFFKARGPIYTPSADAFSGNSPSWRPELAIVEYSPKPMDNSPESRAEDTSCLSGNGTIEGKFDCGYLVSVKLGSEVLRGVLYHPEQLVPPPSIPKHESAIVPINRKPHRSGRRKKNKRRWDPNYPKPNRSGYNFFFAEKHYTLKTLYPNREREFTKMIGQSWNSLSPEERMVYQNIGLRDKERYKRELTEYKEKMKLRQTSEVGRP* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0178 322 SMART bright_3 28 119 IPR001606 GO:0003677
Gso4g0178 322 MobiDBLite consensus disorder prediction 222 236 - -
Gso4g0178 322 SMART ARID_2 24 114 - -
Gso4g0178 322 CDD HMGB-UBF_HMG-box 241 304 - -
Gso4g0178 322 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 7 318 - -
Gso4g0178 322 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 241 308 IPR009071 -
Gso4g0178 322 Pfam HMG (high mobility group) box 241 308 IPR009071 -
Gso4g0178 322 SUPERFAMILY HMG-box 238 311 IPR036910 -
Gso4g0178 322 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 7 318 - -
Gso4g0178 322 CDD ARID_HMGB9-like 29 114 IPR045303 GO:0003677
Gso4g0178 322 Gene3D - 23 124 IPR036431 GO:0003677
Gso4g0178 322 Gene3D High mobility group box domain 225 320 IPR036910 -
Gso4g0178 322 MobiDBLite consensus disorder prediction 209 241 - -
Gso4g0178 322 MobiDBLite consensus disorder prediction 1 21 - -
Gso4g0178 322 Pfam ARID/BRIGHT DNA binding domain 32 114 IPR001606 GO:0003677
Gso4g0178 322 ProSiteProfiles ARID domain profile. 27 118 IPR001606 GO:0003677
Gso4g0178 322 SMART hmgende2 240 309 IPR009071 -
Gso4g0178 322 SUPERFAMILY ARID-like 25 126 IPR036431 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0178 Gso-Chr4 1572403 1574868 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0178 14 315 ARID Transcription Factor Family AT1G76110 66.343 1.19e-135 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Gso4g0178 ARID 1.2e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0178 - - gmx:100784746 669.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0178 4 1572403 1574868 Gso4g0178 4 1572403 1574868 ECH