Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0152 ATGGGAGATAGTGGTGTGACATCATCTGCTGCTACCATGATGGAAGCTCCACCACCTGATGGAACAACAACAACAGCAACTTCAATGGATTTTGATTACATGGGTGAGTTTTTCTTAGATGGGTGCTGGTTGGAAGCCTCTGCCGATGTATCTGACTTCTTGCTGCAAAGTCCTTCCTTTTCCAATCCCCTCTTTGACCCTTCATTATCCTGGCCTGCCTTGGAGACCAACCACAATAAATCCCAGGATGCTGCTTTTGGGACTCAACAAGAAAGTCATAACAACATCGTTAGTGTTGTTGCTGGTGGTGGTTATAGTCAGCAGTTTCAGTCTGAGACTCATTCAGTTGAAGGTGTATCTGAAGGTGTCAGAAGGTGGTGGTTTGCACCCTCACCCATACCTAGTCCTGGACCTGGGCCTTCTATAATGGAGAAGCTAATAAGGGCCCTCATGTGGATCAAAGATTACAACAGGAACAAAGATATGCTTATACAGATTTGGGTGCCAATTCATAAAGAGGGTAGGCCGATTCTTGCGGCTGATGACCTTCTGTTCTCACTTGAATCCAAGTCTCTGAATCTTGCAAAGTACCGCGAAATCTCTGTGACATATGAGTTCTCTGCAGAGGAGAGTGACTCCAAGGAGTTGGCGCGGGGATTGCCTGGTCGAGTGTTTAGGTACAAGGTTCCTGAGTGGACTCCTGATGTTAGATTCTTTAGGAGTGATGAGTATCCAAGAGTTGACCATGCTCAAGAGTATGATGTGCGTGGAACGGTGGCGGTTCCAATCTTTGAACAAGGAAGCAAGACGTGCTTGGGGGTTATTGAGGTTGTGATGACTACTCAGCAGATCAACTATGGTCCTGAACTTGAGAGTGTTTGCAAAGCACTTGAGGCTGTTGATCTTAGAAGCTCAAAACAATTAAGTATTCAGAATGTGAAGGCATGCAATAGGACCTATGAAGCTGCACTACCTGAGATTTATGAGGTGTTGAGATCTGCTTGTGAAATGCACAGATTACCTTTAGCTCAAACTTGGGTCCCATGTGTACAACAAGGCAAAGAGGGGTGCCGGCACTCTGAAGATAATTATCTACTCTGCATATCTCCTGTGGAGCATGCTTGCTATGTTGGTGATCCCTCTATTAGGTCTTTTCATGAGGCTTGCACTGAGCATCACTTGTTAAAAGGTGAAGGTGTTGCTGGGGGAGCTTTTATGACAAACCAGCCGTGCTTCTCAGATGACATAACTTCCTTAAGCAAGAAAGACTATCCACTGTCTCATTATGCAAGATTGTTTGGATTGCACGCTGCTGTTGCCATACGCCTTCGAAGCATCTATAATAGCACAGATGACTTTGTTCTAGAGTTCTTCTTGCCTGTAGATTGCAATGACAGTGAAGAGCAGAGAAAGATGCTTACTGCACTGTCCATCATTATACAAAGGGTTTGTCGCAGCCTGCGCGTTATAAGAGACAAGGAATTAGAGGAAGCTAACTTGTCAGTTGATGAAGTGATAGCCCTTGCAGATAGTGGATTTGCTAGGAATGCAATTTTTTCGGAACCCCAATACAAAGGGATGGTCGCCTCATTGGATGCTGAAGAAAAATCAAGTGAAACAATGGGTAGAAAATTCTCTGACCTAAGGCAGCAACAAGAAAGTCCTATTTTAAAAGGAAACCTTGACTGTGTTAAGGAGTGTTCTACGTCTGTTGAGGGTAACTTATCAAGTTTGGGAACAAATAAAACTGGAGAGAGAAGACGTGCCAAAGCAGAGAAAACTATCACTTTGCAAGTTCTTAGACAATATTTTGCTGGAAGCCTAAAAGATGCTGCCAAGAATATTGGTGTTTGTACTACAACTTTGAAAAGGATCTGCCGGCAACATGGGATAAAGCGTTGGCCTTCTCGAAAGATCAAAAAGGTTGGTCACTCTCTACAAAAACTTCAACTTGTCATCAACTCAGTTCAAGGTGCCTCTGGTGCATTTCAAATCGGTTCCTTCTATTCAAACTTCCCGGATCTAGCTTCTCCAAATTTATCAGGAACTGGCTTCTTCTCAACTTTGAATCAAAGTGATTATCCAAACTCAACAAGCACACAGCCAGATCATGGCTCATTGAGCCCAGAAGGTGCATCAAAATCGCCATCTTCATCGTGCAGTCAGAGTTCCATTTCAAGCCATTCCTGCTCCAGCATGTCAGAGCTACAACAGCATCGCACAGCTAACGGTGCTGGTAACAAAGTTTCCACCACGGTTAGTGAAGATTCTGCTGGTGTTGTGTTGAAGAGGATCAGTAGCGAGGCAGAGCTTAAAAGCCTTAGTCAAGATAGAGCAAAGCTCTTGCCAAGATCACAAAGCCAGGAAACACTTGGTGAACACCCTAAAACTCAGTATCAACAGCCTTTATTGAAAACCAGTAGCAGCAAGGTGGATTCTCACAGAGTAAAAGTCGCATATGGAGATGAGAAAACCCGGTTTCGGATGCCGAAGAGTTGGGGCTATGAAGATCTTCTGCAGGAAATTGCAAGGAGATTTAATGTGAGTGACATGAGCAAATTTGATGTCAAATACTTGGATGATGACTGTGAGTGGGTACTACTCACTTGTGATGCTGATTTAGAGGAGTGCATTGATGTTTGTCAATCTTCCGAGAGTGGTACCATCAAACTTAGTCTACAACCTTCTAGTCATAGTATGAGAAGTTCTTTAGAATTTAGATAA 2724 0.4372 MGDSGVTSSAATMMEAPPPDGTTTTATSMDFDYMGEFFLDGCWLEASADVSDFLLQSPSFSNPLFDPSLSWPALETNHNKSQDAAFGTQQESHNNIVSVVAGGGYSQQFQSETHSVEGVSEGVRRWWFAPSPIPSPGPGPSIMEKLIRALMWIKDYNRNKDMLIQIWVPIHKEGRPILAADDLLFSLESKSLNLAKYREISVTYEFSAEESDSKELARGLPGRVFRYKVPEWTPDVRFFRSDEYPRVDHAQEYDVRGTVAVPIFEQGSKTCLGVIEVVMTTQQINYGPELESVCKALEAVDLRSSKQLSIQNVKACNRTYEAALPEIYEVLRSACEMHRLPLAQTWVPCVQQGKEGCRHSEDNYLLCISPVEHACYVGDPSIRSFHEACTEHHLLKGEGVAGGAFMTNQPCFSDDITSLSKKDYPLSHYARLFGLHAAVAIRLRSIYNSTDDFVLEFFLPVDCNDSEEQRKMLTALSIIIQRVCRSLRVIRDKELEEANLSVDEVIALADSGFARNAIFSEPQYKGMVASLDAEEKSSETMGRKFSDLRQQQESPILKGNLDCVKECSTSVEGNLSSLGTNKTGERRRAKAEKTITLQVLRQYFAGSLKDAAKNIGVCTTTLKRICRQHGIKRWPSRKIKKVGHSLQKLQLVINSVQGASGAFQIGSFYSNFPDLASPNLSGTGFFSTLNQSDYPNSTSTQPDHGSLSPEGASKSPSSSCSQSSISSHSCSSMSELQQHRTANGAGNKVSTTVSEDSAGVVLKRISSEAELKSLSQDRAKLLPRSQSQETLGEHPKTQYQQPLLKTSSSKVDSHRVKVAYGDEKTRFRMPKSWGYEDLLQEIARRFNVSDMSKFDVKYLDDDCEWVLLTCDADLEECIDVCQSSESGTIKLSLQPSSHSMRSSLEFR* 908
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0152 907 MobiDBLite consensus disorder prediction 1 25 - -
Gso4g0152 907 MobiDBLite consensus disorder prediction 692 753 - -
Gso4g0152 907 ProSiteProfiles PB1 domain profile. 813 896 IPR000270 GO:0005515
Gso4g0152 907 Gene3D - 177 313 IPR029016 -
Gso4g0152 907 MobiDBLite consensus disorder prediction 784 808 - -
Gso4g0152 907 ProSiteProfiles RWP-RK domain profile. 581 662 IPR003035 -
Gso4g0152 907 PANTHER PROTEIN NLP4 26 903 - -
Gso4g0152 907 CDD PB1_NLP 814 895 IPR034891 -
Gso4g0152 907 SMART PB1_new 813 896 IPR000270 GO:0005515
Gso4g0152 907 Pfam RWP-RK domain 594 642 IPR003035 -
Gso4g0152 907 PANTHER PROTEIN NLP8 26 903 IPR045012 GO:0003700
Gso4g0152 907 Gene3D - 811 896 - -
Gso4g0152 907 SUPERFAMILY CAD & PB1 domains 813 898 - -
Gso4g0152 907 Pfam PB1 domain 814 895 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0152 Gso-Chr4 1355039 1359799 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0152 29 898 NLP Transcription Factor Family AT1G20640 48.778 0.0 751
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Gso4g0152 PB1 7.6e-19 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0152 - - gmx:100790922 1751.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0152 4 1355039 1359799 Gso4g0152 4 1355039 1359799 ECH