Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0145 ATGATGGCTGCGAGCTGGGATGGAAGTAGTGACCCTGGCAGTCAGTCAGATGATAGCTTTCTTGAGAGGTTGCACATTGAGCCTCTTTATGATGCCTTTGTATGTCCGCTGACGAAGCAAGTTATGCGTGATCCTGTTACTTTAGAAAATGGGCAGACTTTTGAACGTGAAGCAATTGAAAAATGGTTCAAGGAATGTAGAGAGAGCGGGCGGAGACTGCTATGCCCTTTGACTCTTCAAGAACTAAGAAGTACAGAGCTGAATCCAAGTATGGCTTTGCGTAACACCATTGAAGAATGGACTGCCAGGAATGAAGCTGCACAGCTGGATATGGCTCGCCGGTCATTGAATATGGGGAGTCCAGAAAATGAGACTCTTCAGGCCTTAAAGTATGTCCAGCACATCTGCCGAAGAAGTCGATCAAACAAATACACTGTCCGCAATGCAGGGCTTATCCCAATGATTGTTGACATGCTGAAGAGTAGCAGCCGTAAGGTTCGTTGTAGAGCTCTGGAAACCCTTAGAGTTGTGGTAGAGGAAGATGATGAGAATAAGGAATTGTTGGCTGAAGGGGATACTGTTCGCACTGTAGTAAAATTCCTTTCACATGAGCTTTCTAAAGAAAGAGAGGAGGCTGTCTCCTTGCTTTACGAGCTCTCAAAATCTGCAACCCTTTGTGAGAAGATTGGTTCTATCAATGGTGCCATTCTTATACTAGTAGGGATGACAAGCAGCAAATCAGAAGATCTTCTCACTGTTGAGAAGGCAGATAAAACATTGGAGAATCTGGAGAAGTGTGAGAGTAATGTGCGGCAGATGGCCGAAAATGGTAGATTGCAGCCTCTTCTGACCCAGCTTCTTGAAGGTCCACCAGAAACCAAACTCTCCATGGCTACATACCTTGGTGAGCTGGTTTTAAACAATGATGTTAAAGTCCTTGTTGCTGGAACTGTGGGTTCATCTCTGATCAATATAATGAAAAGTGGTAATATGCAATCAAGAGAAGCAGCACTGAGGGCACTAAATCAGATATCATCATGTGACCCAAGTGCAAAAATTTTAATAGAGGCTGGAATACTTTCTCCTCTTGTCAATGACCTTTTTGCAGTCGGTCCTAATCAGCTTCCAACACGATTAAAAGAGATCTCCGCTACAATTCTTGCTAGTGTTGTAAACTCAGGAGAAGACTTTTATTCCATTCCATTTGGGCCTGACCACCAAACTCTGGTCTCAGAGGATATAGTTCGTAATCTACTCCATCTTATAAGTAACACTGGTCCAGCAATAGAGTGCAAACTTCTCCAAGTTCTTGTTGGACTTACTATTTCTCCAACTACAGTTCTGAGTGTTGTGGCTGCTATCAAAAGCTCTGGTGCCACCATCAGTCTAGTTCAGTTCATTGAGGCACCACAGAAAGATCTGCGTGTAGCTTCCATAAAACTTCTTCAGAATTTGTCTCCTCATATGGGTCAGGAACTAGCTGATGCACTACGCGGCTCAGTTGGACAGCTTGGTAGTCTAATTAAAGTCATATCAGAAAATACAGGAATCACTGAAGAGCAGGCAGCGGCCGTTGGCCTTTTAGCGGATCTTCCTGAACGGGACTTGGGCCTCACAAGACAGCTACTAGATGAAGGTGCCTTTGTGATGGTCATATCCAGGGTGATTGCCATCAGGCAGGGAGAGATCCGAGGCACTCGCTTCATGACACCATTTCTTGAGGGGCTTGTAAAGATTGTTGCAAGGGTTACATATGTCTTGGCAGAAGAGCCTGATGCCATTGCTCTCTGCCGTGATCACAATCTTGCCGCTCTCTTTATTGATCTGCTTCAGTCCAATGGACTTGATAACGTACAGATGGTTTCTGCTACAGCTCTGGAGAATTTATCCCAAGAATCGAAAAACTTAACCAGACTACCTGAAATGCCATCGCTGGGTTTTTGTGCTTCAGTGTTTTCATGCTTCAGCAAGCAGCCAGTCATAACTGGATTGTGTAGGCTCCACCGAGGGATATGTTCTTTAAAAGAAACATTCTGTCTCTATGAAGGGCAGGCAGTGCTTAAGTTAGTAGGTCTACTGGACCACACAAATGTGATTGTGGTCGAGGCAGCACTTGCAGCCTTAGCTACTTTAATAGATGATGGAGTAGATATTGAGCAAGGAGTGGCAATTTTGTGTGAAGCAGAGGGAGTGAAGCCTATACTGGATGTGCTACTTGAGAAAAGAACAGAAACATTGAGGAGGAGGGCAGTTTGGGCAGTGGAGAGACTATTGAGAACAGATGATATAGCCTATGAAGTTTCTGGGGACCAAAATGTGAGTACTGCACTTGTGGATGCTTTCCAGCATGGTGACTATCGAACTCGGCAGACAGCTGAGCGTGCCCTCAAGCATGTTGATAAGATTCCAAACTTCTCAGGAATCTTTCCAAACATGGGATGA 2442 0.4468 MMAASWDGSSDPGSQSDDSFLERLHIEPLYDAFVCPLTKQVMRDPVTLENGQTFEREAIEKWFKECRESGRRLLCPLTLQELRSTELNPSMALRNTIEEWTARNEAAQLDMARRSLNMGSPENETLQALKYVQHICRRSRSNKYTVRNAGLIPMIVDMLKSSSRKVRCRALETLRVVVEEDDENKELLAEGDTVRTVVKFLSHELSKEREEAVSLLYELSKSATLCEKIGSINGAILILVGMTSSKSEDLLTVEKADKTLENLEKCESNVRQMAENGRLQPLLTQLLEGPPETKLSMATYLGELVLNNDVKVLVAGTVGSSLINIMKSGNMQSREAALRALNQISSCDPSAKILIEAGILSPLVNDLFAVGPNQLPTRLKEISATILASVVNSGEDFYSIPFGPDHQTLVSEDIVRNLLHLISNTGPAIECKLLQVLVGLTISPTTVLSVVAAIKSSGATISLVQFIEAPQKDLRVASIKLLQNLSPHMGQELADALRGSVGQLGSLIKVISENTGITEEQAAAVGLLADLPERDLGLTRQLLDEGAFVMVISRVIAIRQGEIRGTRFMTPFLEGLVKIVARVTYVLAEEPDAIALCRDHNLAALFIDLLQSNGLDNVQMVSATALENLSQESKNLTRLPEMPSLGFCASVFSCFSKQPVITGLCRLHRGICSLKETFCLYEGQAVLKLVGLLDHTNVIVVEAALAALATLIDDGVDIEQGVAILCEAEGVKPILDVLLEKRTETLRRRAVWAVERLLRTDDIAYEVSGDQNVSTALVDAFQHGDYRTRQTAERALKHVDKIPNFSGIFPNMG* 814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0145 813 SUPERFAMILY RING/U-box 24 110 - -
Gso4g0145 813 SMART arm_5 266 306 IPR000225 GO:0005515
Gso4g0145 813 SMART arm_5 590 631 IPR000225 GO:0005515
Gso4g0145 813 SMART arm_5 672 713 IPR000225 GO:0005515
Gso4g0145 813 SMART arm_5 181 221 IPR000225 GO:0005515
Gso4g0145 813 SMART arm_5 347 392 IPR000225 GO:0005515
Gso4g0145 813 SMART arm_5 307 346 IPR000225 GO:0005515
Gso4g0145 813 SMART arm_5 139 179 IPR000225 GO:0005515
Gso4g0145 813 SMART arm_5 717 759 IPR000225 GO:0005515
Gso4g0145 813 Gene3D - 116 314 IPR011989 -
Gso4g0145 813 CDD RING-Ubox_PUB 33 80 IPR045210 -
Gso4g0145 813 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 43 2 811 - -
Gso4g0145 813 SUPERFAMILY ARM repeat 120 531 IPR016024 -
Gso4g0145 813 SUPERFAMILY ARM repeat 454 799 IPR016024 -
Gso4g0145 813 Gene3D - 573 803 IPR011989 -
Gso4g0145 813 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 2 811 - -
Gso4g0145 813 Coils Coil 256 276 - -
Gso4g0145 813 Pfam U-box domain 31 105 IPR003613 GO:0004842|GO:0016567
Gso4g0145 813 SMART Ubox_2 32 100 IPR003613 GO:0004842|GO:0016567
Gso4g0145 813 ProSiteProfiles U-box domain profile. 28 107 IPR003613 GO:0004842|GO:0016567
Gso4g0145 813 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 30 109 IPR013083 -
Gso4g0145 813 Gene3D - 315 486 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0145 Gso-Chr4 1249595 1254483 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0145 3 813 U-box Gene Family AT1G76390 65.560 0.0 1043
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0145 - - gmx:100815928 1537.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0145 4 1249595 1254483 Gso4g0145 4 1249595 1254483 ECH