Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0144 ATGTTTTCTGAAAGATTGGGGGCAGACGAATCTCATTGTCAAGATTTACAGAGTTTGAGTGTGTCAAAGCGACTTGTGAGGAGTGTTAGCCAGAAGTGGAGGAAGAAGAGTAACAGGAATTCTGGGGAAGAAGCTGACGATGTAAATGGAGTTTCTTTAAGATGCTTAAATCTGTATGGACGAGGTGGGGGCTGCAAGGTAGGTGCTGACACTGGTGATGATTTTGGCGATTCAAGCAGTAGAAGGAGATCTAGTGCCAGTGACGAAGGAAAGGGATATAAGCCGATTTGTGGCCCAGAAGAAACTGCTGTGGATTGCTTTTCATATGGGGTGAAGGACAGGTTCTGGAGGAGACACAACCGAAAGAATTCTGAGCTTGAAGAATTGTTTACAAACAATAGAATGCATATTTTTCTTCCTGATGATATTCTTGAAATGTGTTTGGTTAGGCTTCCACTGACAAGTCTCATGAATGCCCGTCTTGTGTGTAAAAAATGGAGGTCGTTGACCACCACGCCTAGGTTCCTCCATATGAGAAGGGAGGGTTCATATCAAAGTCCATGGTTGTTTCTGTTCGGGGTTGTTAAAGATGGATTTTGTTCTGGTGAGATACATGCGCTGGATGTGTCTCTGAATCAATGGCACAGGATAGATGCTCATTTTCTCAGAGGAAGGTTCTTGTTCTCTGTTGCTGGTATACAGGATGATATCTTCATTGTTGGAGGATGTTCGAGCTTGACTAACTTTGGGAAAGTGGATAGGAGCTCATTCAAAACACACAAAGGGGTGCTTGCATTTAGCCCCTTGACAAAATCTTGGCGTAAAATGCCATCCATGAAATATGCTAGATCAAATCCTATATTAGGAATCTCTGAGGTCAGCTTGGATTTTCCAACTTGTCAAAGTCATCAAAGTCGGCAGGATAGACGTTTTCCAAGATCAAGGATTGGTGGGGTTTCAGACGTCTATGAGGATCCTCACAAGCTTTCAATGAGACGTCATTGCAAACCTGCTTTTAATGAGACTGAAGCTTCATCTTTGCCCAGTCGAAAGGCATACAAATTTCTTAGACAAAAAAGTGACCATTCAAGCTCAAAGGGCAGTAAAAGATTTTTGTTGATAGCTGTAGGAGGTCTGGGGTCTTGGGATGAGCCTCTGGACGCTGGGGAAATATATGATTCTGTGTCAAATAAATGGACTGAAATCCCAAGATTACCTTTTGATTTTGGGGTTGCTCGTTCTGGAATTGTTTGTGGCAGGATGTTTTATGTTTATTCTGAAACAGACAAGCTTGCAGCATATGACATAGAACGGGGTTTCTGGATTGCAATTCAAGCCACTCCAATCCCACCTCGTGTACATGGGTACTACCCCAAACTTGTATCTTCTGATGGCCGCCTTTTCATGCTCTCAGTGTCCTGGTGTGAAGGGGATGGTCAGATTGGGAGACGAAACAAGGCTGTTAGAAAATTATGGGAGTTGGATCTCATGTATCTTACCTGGACTGAAGCCTCAGTGCATCCGGATGCCCCAATGGACTGGAACGCTGTTTTTGTGTCAGATAAAAGCCTGATTTTTGGGGTGGAGATGTTCAAAATAATTGGCCGGGTATTGGGTTTTTTCACCGTTTGTGATGTGTCTGATATGGCAAACTGGAACCATATTTCAAGGGATCATGTTACTCATGAGCTGGACGTTTCTTCGTGCTTGACCAAATCTGTGGCAGTGTTACACCTTTGA 1740 0.4345 MFSERLGADESHCQDLQSLSVSKRLVRSVSQKWRKKSNRNSGEEADDVNGVSLRCLNLYGRGGGCKVGADTGDDFGDSSSRRRSSASDEGKGYKPICGPEETAVDCFSYGVKDRFWRRHNRKNSELEELFTNNRMHIFLPDDILEMCLVRLPLTSLMNARLVCKKWRSLTTTPRFLHMRREGSYQSPWLFLFGVVKDGFCSGEIHALDVSLNQWHRIDAHFLRGRFLFSVAGIQDDIFIVGGCSSLTNFGKVDRSSFKTHKGVLAFSPLTKSWRKMPSMKYARSNPILGISEVSLDFPTCQSHQSRQDRRFPRSRIGGVSDVYEDPHKLSMRRHCKPAFNETEASSLPSRKAYKFLRQKSDHSSSKGSKRFLLIAVGGLGSWDEPLDAGEIYDSVSNKWTEIPRLPFDFGVARSGIVCGRMFYVYSETDKLAAYDIERGFWIAIQATPIPPRVHGYYPKLVSSDGRLFMLSVSWCEGDGQIGRRNKAVRKLWELDLMYLTWTEASVHPDAPMDWNAVFVSDKSLIFGVEMFKIIGRVLGFFTVCDVSDMANWNHISRDHVTHELDVSSCLTKSVAVLHL* 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0144 579 Gene3D - 151 292 IPR015915 GO:0005515
Gso4g0144 579 SUPERFAMILY Kelch motif 373 527 IPR015915 GO:0005515
Gso4g0144 579 SUPERFAMILY Kelch motif 187 288 IPR015915 GO:0005515
Gso4g0144 579 SMART fbox_2 139 179 IPR001810 GO:0005515
Gso4g0144 579 ProSiteProfiles F-box domain profile. 133 179 IPR001810 GO:0005515
Gso4g0144 579 PANTHER OS09G0555300 PROTEIN 1 579 - -
Gso4g0144 579 SMART kelc_smart 236 293 IPR006652 GO:0005515
Gso4g0144 579 SMART kelc_smart 372 416 IPR006652 GO:0005515
Gso4g0144 579 Pfam Kelch motif 373 406 IPR006652 GO:0005515
Gso4g0144 579 Pfam Kelch motif 225 279 IPR006652 GO:0005515
Gso4g0144 579 SUPERFAMILY F-box domain 139 200 IPR036047 GO:0005515
Gso4g0144 579 MobiDBLite consensus disorder prediction 75 89 - -
Gso4g0144 579 MobiDBLite consensus disorder prediction 75 94 - -
Gso4g0144 579 PANTHER OS09G0555300 PROTEIN 1 579 - -
Gso4g0144 579 Pfam F-box domain 139 175 IPR001810 GO:0005515
Gso4g0144 579 Gene3D - 342 564 IPR015915 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0144 Gso-Chr4 1244151 1247032 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0144 - - gmx:100813797 1159.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0144 4 1244151 1247032 Gso4g0144 4 1244151 1247032 ECH
Gso4g0144 4 1244151 1247032 Gso6g0053 6 531616 532067 GST