Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0142 ATGTACGATTTGGGAGCGACTATGCCTGTGGGAATGGATTTTCCTCCTCCGTTTACTATGTTAGAGGCCAAAGACAGTGCATTTGTGGTGGATGATCAGAAATCAGGGGATTTGAATGATATAAAACCGATGACTAAGGGTAAGCCTCCACGCCATGCTTCGACTTTGAGGCACAGCATTAGCAACACCAGATTGCTGGCCATATCAGATTTGAGTTTGGATGTGGGGGTTACTGGGAGCAAGTCATCTTCTGAAGAAAACACGGAGTTTCTACCAATACTTCGGTCAGGAAGCTGTGCTGAAAGAGGACCTAAACAATATATGGAAGACGAACACATATGTATAGATAATCTTATTCAGCATATAGGTCCTGCTTCAACTATTCCTTTACCTGGAGCTTTTTATGGGGTGTTTGATGGCCATGGGGGTACAGATGCAGCTTTGTTCATAAGAAATAACATCCTCAGATTCATAGTTGAGGACTCCCATTTTCCAACTTGCGTGGGGGAGGCAATTACAAGTGCGTTTGTAAAAGCTGATTATGCATTTGCAGATTCTAGTTCGCTTGATATCTCATCTGGCACCACTGCTTTAACTGCTCTTGTATTCGGAAGGACCATGATAGTTGCCAATGCTGGGGATTGTAGAGCTGTACTGGGGAGGCGTGGTAGAGCAATTGAGATGTCAAAAGACCAGAAACCAAATTGCATTTCAGAAAGGCTAAGGATTGAGAAACTTGGCGGGGTGGTATATGATGGATACTTGAATGGCCAGTTATCTGTTTCCCGTGCCTTAGGAGACTGGCACATGAAGGGTCACAAGGGTTCTGCCTACCCCTTGAGTGCTGAGCCAGAGCTGCAGGAAATCAACCTGACTGAGGATGATGAGTTCTTGATTATGGGCTGCGACGGCCTATGGGATGTAATGAGTAACCAATGTGCTGTAACCATGGCAAGGAAAGAATTGATGATACATAATGATCCTCAAAGGTGTTCAAGAGAGTTGGTCAGAGAGGCTCTTAAGCGTAACTCGTGTGATAATTTGACAGTTATCGTGATATGTTTCTCCCCAGATCCTCCTCCTAGGATAGAGACACCTCCTTCTCGAGTCAGGAGGAGTATATCGGCAGAAGGCCTCAATTTACTTAAGGGTGTATTGGACTGTTAG 1167 0.4482 MYDLGATMPVGMDFPPPFTMLEAKDSAFVVDDQKSGDLNDIKPMTKGKPPRHASTLRHSISNTRLLAISDLSLDVGVTGSKSSSEENTEFLPILRSGSCAERGPKQYMEDEHICIDNLIQHIGPASTIPLPGAFYGVFDGHGGTDAALFIRNNILRFIVEDSHFPTCVGEAITSAFVKADYAFADSSSLDISSGTTALTALVFGRTMIVANAGDCRAVLGRRGRAIEMSKDQKPNCISERLRIEKLGGVVYDGYLNGQLSVSRALGDWHMKGHKGSAYPLSAEPELQEINLTEDDEFLIMGCDGLWDVMSNQCAVTMARKELMIHNDPQRCSRELVREALKRNSCDNLTVIVICFSPDPPPRIETPPSRVRRSISAEGLNLLKGVLDC* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0142 388 Gene3D - 72 358 IPR036457 -
Gso4g0142 388 PANTHER PROTEIN PHOSPHATASE 2C 27-RELATED 8 377 - -
Gso4g0142 388 PANTHER PROTEIN PHOSPHATASE 2C 8 377 IPR015655 GO:0004722|GO:0006470
Gso4g0142 388 SMART PP2C_4 85 353 IPR001932 -
Gso4g0142 388 SUPERFAMILY PP2C-like 88 356 IPR036457 -
Gso4g0142 388 MobiDBLite consensus disorder prediction 34 56 - -
Gso4g0142 388 ProSitePatterns PPM-type phosphatase domain signature. 134 142 IPR000222 GO:0043169
Gso4g0142 388 ProSiteProfiles PPM-type phosphatase domain profile. 95 355 IPR001932 -
Gso4g0142 388 Pfam Protein phosphatase 2C 96 347 IPR001932 -
Gso4g0142 388 SMART PP2C_SIG_2 110 355 IPR001932 -
Gso4g0142 388 CDD PP2Cc 95 355 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0142 Gso-Chr4 1227316 1230666 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0142 10 387 PP2C-type Phosphatase Gene Family AT2G33700 70.207 0.0 542
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0142 K14803 - gmx:100778015 744.577
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0142 4 1227316 1230666 Gso4g0142 4 1227316 1230666 ECH
Gso4g0142 4 1227316 1230666 Gso6g0130 6 1211446 1214710 GST