Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0141 ATGAATTTGTTCTGGGTTGTTTGTTGGGTGGTGTCGTGTTTGGGAGTATCATCAGTAACTCCTTTTGTGGCGGCTGCAAATTTGTCATCCTCAAGACCCGCCTTTGTGCACATTGGAGCAATCTTCAGCATGGATTCTGTTCTTGGGAAAGTCGCTAAAATTACATTGGAGGAAGCCGTCAAAGATGTAAACGCCGACAAAACCATTCTACATGGAACTCAACTTGTTCTCTCTATGCAAAATTCCAATCACAGTGGTTTCGTAGGCATGGTTCAAGCTTTGCGGTTCATGGAGACTGATGTGATTGCTATAATAGGGCCACAATCTTCTGTGACTGCCCACATAATATCCCATGTTGCAAATGAACTCCGGGTTCCTTTAGTGTCATTTGCGGCTACAGACCCCACCCTTTCATCGCTGCAGTTCCCTTTCTTTGTGAGGACAACACAGAGTGATTTGTACCAAATGAAGGCAGTTGCTGAAATTATTGATTATTATGGTTGGAAGGAGGTGATTGCCATATATGTGGATGATGATTATGGGCGAAATGGCGTGGCCGCATTGGATGATGAACTAGCTTCAAGGCGTTGTAGAATCTCCTTCAAAGAAGGAATTAAATCAGGAACCAAAGTTGACCGGGGTGAAATTACAAGTTTACTTGTGAAAGTGGCACTGATGCAATCTCGGGTCATTGTTCTCCATGCACAAACTGATTCTGGATTTATGATTTTCAATTTGGCGCGTTATCTTGGGATGACAGACAATGGCTATGTGTGGATAGTCACAGACTGGCTCTCTTCTTTTCTGGATTCCTCTTCTCTCCCTTCAGAGACAATGGATGTTCTCCAAGGAGTGCTTGTTTTGCGCCAGCATACACCTGATTCGGATAGAAAAAGGGCATTTCTCTCTAGGTGGAAGAAGTTAACTGGTGGCTCTTTGGGGTTACATTCTTATGGCCTCTATGCTTATGATTCTGTTTGGCTAGTTGCACGGGCTATTGATGCTTTTTTCAGTCAGGGTGGGATTGTTTCGTGTACCAATTACACAAGTTTAGGTGGTGATAAGGGAGGTGATCTTAACCTTGATGCAATGAGCATTTTTGACAATGGAACTCTTCTGTTGAAGAACATATTGCAGAGTGACTTTGTTGGATTATCAGGTCAAATGAAATTTGAACCAGACCGGTCTCTTGTTCATCCTGCCTATGACGTCCTTAATGTGGTTGGAAATGGCCTTAGGAGGGTTGGTTACTGGTCCAACTATTCTGGTCTGTCAATTGTATCTCCTGAGATATTCTATGCAAAGCCACCTAATAGATCAAGTGCAAATCAGAAGCTATACAGTGTGATATGGCCTGGAGAAACATTATCTAAACCTCGTGGGTGGGTCTTCCCAAACAATGGTAGACAATTGAGAATTGGTGTGCCTATCCGAGTCAGTTACCGTGAATTTGTGGCACCGGTGCAGGGAACAGAGATGTTTAAAGGTTTCTGTGTTGATGTATTCACAGCAGCAGTAAACTTGTTGCCTTATGCTGTTCCTTACCGTTTCGTCCCATTTGGAGACGGCCACAAAAATCCAAGCTACACACAACTTGTCAACTTAATCACAACTGGTTACTTTGATGGCGCCATTGGTGACATTGCTATTGTCACAAACCGGACAAGGATTGTAGATTTTACACAGCCATATGCTGCGTCTGGACTTGTTGTGGTGGCCCCTTTCAAGAAAATCAATTCTGGTGGTTGGTCTTTCTTGCAGCCATTTACTCCTCTTATGTGGATTGTGACTGGTTGTTTATTCCTTTTCATTGGGATAGTTGTATGGATTCTGGAACACAGGATAAATGATGAGTTCAGGGGTCCACCTAGGCAGCAAATTATAACCATGTTGTGGTTTAGCCTATCAACTCTGTTTTTTTCCCACAGAGAGAATACCATGAGTTCTCTTGGTCGGTTGGTGATGCTCATATGGTTATTTGTGGTTTTGATCCTCACTTCCAGCTACACTGCAAGTTTAACATCCATACTCACAGTGCAGCAGTTATATTCTCCTATCAGTGGAATAGAGAGCTTAAAAGCTAGTGACGAACCTATAGGGTTCCCAGTGGGTTCATTTGCAGAACATTACTTGATTCAAGATTTAGGAATAGCCAAATCTAGGCTTATTCCACTTGGATCTCCAGAAGAATATGCTAAGGCACTCCAGCTTGGTCCTAAAAGAGGAGGAGTTGCTGCTATTGTTGATGAACGACCCTATGTCGAAATCTTCTTATCAAGCCAGTGCACATTCAGGATTGTAGGTCAGGAGTTCACCAGAAGTGGCTGGGGTTTTGCATTCCCTAGGGACTCTCCTTTGGCTGTAGACATGTCAACTGCCATTCTACAGCTTTCTGAAACTGGTGATCTACAGCGGATTCATGATAAGTGGATGACACGAAGCTCTTGTAGTTTAGAGAATGCTGAAATTGATTCAGATCGTCTTCAGCTTAAAAGCTTCTGGGGTCTCTTTCTCATTTGCGGGATAGCTTGCTTTATTGCTCTTGTTTTGCATTTTATGCAGCTTATGTTCCAGTTATGGCAATCTCCTCCTTCTGAACCTGCTTCTAGTGCTAGCTCAATTTCTGGTCGTTTTCAAAGATTTCTTACACTCATTGATGAGAAGGAAGATCCATCTAAGAGTAAAGGAAGAAAGAGGAATGGAGATGAAAGATCGCTTGAAGATCAACTGGGAAGGCAGCCAAAGAGGGTACAGACAGAAATAAAGTTTTCCACATAG 2778 0.4291 MNLFWVVCWVVSCLGVSSVTPFVAAANLSSSRPAFVHIGAIFSMDSVLGKVAKITLEEAVKDVNADKTILHGTQLVLSMQNSNHSGFVGMVQALRFMETDVIAIIGPQSSVTAHIISHVANELRVPLVSFAATDPTLSSLQFPFFVRTTQSDLYQMKAVAEIIDYYGWKEVIAIYVDDDYGRNGVAALDDELASRRCRISFKEGIKSGTKVDRGEITSLLVKVALMQSRVIVLHAQTDSGFMIFNLARYLGMTDNGYVWIVTDWLSSFLDSSSLPSETMDVLQGVLVLRQHTPDSDRKRAFLSRWKKLTGGSLGLHSYGLYAYDSVWLVARAIDAFFSQGGIVSCTNYTSLGGDKGGDLNLDAMSIFDNGTLLLKNILQSDFVGLSGQMKFEPDRSLVHPAYDVLNVVGNGLRRVGYWSNYSGLSIVSPEIFYAKPPNRSSANQKLYSVIWPGETLSKPRGWVFPNNGRQLRIGVPIRVSYREFVAPVQGTEMFKGFCVDVFTAAVNLLPYAVPYRFVPFGDGHKNPSYTQLVNLITTGYFDGAIGDIAIVTNRTRIVDFTQPYAASGLVVVAPFKKINSGGWSFLQPFTPLMWIVTGCLFLFIGIVVWILEHRINDEFRGPPRQQIITMLWFSLSTLFFSHRENTMSSLGRLVMLIWLFVVLILTSSYTASLTSILTVQQLYSPISGIESLKASDEPIGFPVGSFAEHYLIQDLGIAKSRLIPLGSPEEYAKALQLGPKRGGVAAIVDERPYVEIFLSSQCTFRIVGQEFTRSGWGFAFPRDSPLAVDMSTAILQLSETGDLQRIHDKWMTRSSCSLENAEIDSDRLQLKSFWGLFLICGIACFIALVLHFMQLMFQLWQSPPSEPASSASSISGRFQRFLTLIDEKEDPSKSKGRKRNGDERSLEDQLGRQPKRVQTEIKFST* 926
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0141 925 CDD GluR_Plant 469 810 - -
Gso4g0141 925 Pfam Bacterial extracellular solute-binding proteins, family 3 493 812 IPR001638 -
Gso4g0141 925 MobiDBLite consensus disorder prediction 884 915 - -
Gso4g0141 925 Pfam Ligand-gated ion channel 813 844 IPR001320 GO:0015276|GO:0016020
Gso4g0141 925 Gene3D - 760 818 - -
Gso4g0141 925 MobiDBLite consensus disorder prediction 884 925 - -
Gso4g0141 925 SUPERFAMILY Periplasmic binding protein-like II 447 813 - -
Gso4g0141 925 PANTHER GLUTAMATE RECEPTOR 3.3 23 922 - -
Gso4g0141 925 Gene3D - 151 424 - -
Gso4g0141 925 Pfam Receptor family ligand binding region 57 409 IPR001828 -
Gso4g0141 925 Gene3D - 466 580 - -
Gso4g0141 925 Gene3D - 581 700 - -
Gso4g0141 925 PRINTS Metabotropic glutamate GPCR signature 104 130 IPR000337 GO:0004930|GO:0007186|GO:0016021
Gso4g0141 925 PRINTS Metabotropic glutamate GPCR signature 136 155 IPR000337 GO:0004930|GO:0007186|GO:0016021
Gso4g0141 925 PRINTS Metabotropic glutamate GPCR signature 155 171 IPR000337 GO:0004930|GO:0007186|GO:0016021
Gso4g0141 925 PRINTS Metabotropic glutamate GPCR signature 171 188 IPR000337 GO:0004930|GO:0007186|GO:0016021
Gso4g0141 925 SUPERFAMILY Periplasmic binding protein-like I 33 427 IPR028082 -
Gso4g0141 925 SMART GluR_14 472 813 IPR001320 GO:0015276|GO:0016020
Gso4g0141 925 Gene3D - 55 399 - -
Gso4g0141 925 CDD PBP1_GABAb_receptor_plant 37 427 IPR044440 -
Gso4g0141 925 PIRSF IGluLR_plant 3 924 IPR017103 -
Gso4g0141 925 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 23 922 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0141 Gso-Chr4 1217726 1222316 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0141 30 916 Ion Channels AT1G42540 65.256 0.0 1256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0141 K05387 - gmx:102661260 1811.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0141 4 1217726 1222316 Gso4g0141 4 1217726 1222316 ECH
Gso4g0141 4 1217726 1222316 Gso6g0129 6 1202436 1207597 GST