Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0133 ATGACTCGTGCCTTGAGATATTTAGGCGAGCGAAACTCGTCCACCGACTCCGCTGTCGTCGATTCCGACTTCGTCGTCATCCTCGCCGCCCTCCTCTGCGCTCTCATCTGCGTTCTCGGCCTCGTCGCCGTCGCCCGCTGCGGCTGTCTCCGCCGCCTCCGCCTCTCCTCCTCTGCAACCACTCCCCAGTCTCCTACCTCCGCCGCCAACAAAGGCGTCAAGAAGAAGGTCCTCCGCTCCCTCCCCAAGCTCACCGCCACAGCGGAATCGGCGGTCAAGTTTGCGGACTGCGCGATCTGCCTCACGGAGTTCGCCGCCGGAGACGAAATCCGAGTGCTGCCTCAGTGCGGACATGGCTTCCACGTCAGCTGCATCGACGCCTGGCTCAGATCGCATTCCTCGTGTCCGTCATGCCGTCAGATTCTGGTGGTTTCTCGCTGCGACAAGTGCGGCGGGATCCCGGCTCCGGCGAGCTCCAGCTCCGATCCGCCGCCGCCGGACTCCGAGGCCAGATTTAAGGGAAGGGAGGACGACGCCAATAGGTTTTTGCCTTAG 555 0.6342 MTRALRYLGERNSSTDSAVVDSDFVVILAALLCALICVLGLVAVARCGCLRRLRLSSSATTPQSPTSAANKGVKKKVLRSLPKLTATAESAVKFADCAICLTEFAAGDEIRVLPQCGHGFHVSCIDAWLRSHSSCPSCRQILVVSRCDKCGGIPAPASSSSDPPPPDSEARFKGREDDANRFLP* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0133 184 PANTHER RING-H2 FINGER PROTEIN ATL8 1 177 - -
Gso4g0133 184 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 59 143 IPR013083 -
Gso4g0133 184 MobiDBLite consensus disorder prediction 168 184 - -
Gso4g0133 184 CDD RING-H2_PA-TM-RING 96 139 - -
Gso4g0133 184 SUPERFAMILY RING/U-box 79 145 - -
Gso4g0133 184 ProSiteProfiles Zinc finger RING-type profile. 97 139 IPR001841 -
Gso4g0133 184 MobiDBLite consensus disorder prediction 154 184 - -
Gso4g0133 184 SMART ring_2 97 138 IPR001841 -
Gso4g0133 184 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 1 177 - -
Gso4g0133 184 Pfam Ring finger domain 96 139 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0133 Gso-Chr4 1170339 1171300 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0133 1 184 C3H Transcription Factor Family AT1G20823 62.626 6.37e-68 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0133 - - gmx:100794614 315.849
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0133 4 1170339 1171300 Gso6g0121 6 1151955 1152847 GST