Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0130 ATGTTGGCAATGGAAGAGCTACTGTGTGAACTTAGTGATCATGAAAAGAGAAACGAGCAAGGTCTGCCCCCGGGTTTCAGGTTTCACCCCACTGATGAAGAACTTATAACCTTTTACTTGGCTTCTAAGGTCTTTAATGACACTTTCTCTAACCTCAAGTTTGCTGAGGTTGACCTCAATAGATGCGAGCCTTGGGAACTTCCAGATGTGGCAAAGATGGGGGAGAGAGAATGGTATCTGTTCAGCTTGAGGGACAGAAAATACCCAACTGGACTAAGAACAAACAGAGCAACCGGAGCTGGGTACTGGAAAGCCACTGGGAAGGACAAGGAAGTGTACAGTGCATCCAGTGGAACCCTACTTGGAATGAAGAAGACCCTTGTTTTCTACAAAGGCAGGGCCCCTCGTGGTGAAAAGACCAAATGGGTCATGCACGAGTACCGTTTGGACGCTCACTTTTCCCTTCCCCATACTTACCCCTCTAAGGAGGAGTGGGTGATATGCAGGATATTTCATAAATCTGGGGAAAAGAGAACTCCAGTGCTCCAAGTCCAAGGACATTCAGATGCTTCTTCGTCCCCAATAAAAAGTTCTTTACCTCCATTACTTGCAAGCTCATCTCATTCTCAGCTGCGAGACTTCCAAAGCCCGGTTCTGATTCACCAACAAGACCAAAATGGCCTCTCTCACCCTCATCTTTTCCCATTGGAAATCTCCAACGCCAGAAACCACCCATCGGACCTACTCTTCAAGCCCCTCCAGCAAAATTGCACCCTGAAGACCAAGGAACAAACTATTATTCCAAAAGTGATCAAAACGGAGGACGCTACATTCTATCATCAATTACTAGATGACCATAATAACATGCGCTGTGTGAACAAGTTGAATCAAAATCCAAGTAATTTCCTCAACACTTTCCCTCTTGAGGTGGACGCTGGCTTGATGGCATTCTCAGGAGCTGCAAATGCTCAAGCTAGGGAAATATCCACAGCTTCAACACCCTTTAATAGGGTAGCCTTGCAGCAGATGCTTGATTCTTGGCCTCTGACCTAG 1053 0.4625 MLAMEELLCELSDHEKRNEQGLPPGFRFHPTDEELITFYLASKVFNDTFSNLKFAEVDLNRCEPWELPDVAKMGEREWYLFSLRDRKYPTGLRTNRATGAGYWKATGKDKEVYSASSGTLLGMKKTLVFYKGRAPRGEKTKWVMHEYRLDAHFSLPHTYPSKEEWVICRIFHKSGEKRTPVLQVQGHSDASSSPIKSSLPPLLASSSHSQLRDFQSPVLIHQQDQNGLSHPHLFPLEISNARNHPSDLLFKPLQQNCTLKTKEQTIIPKVIKTEDATFYHQLLDDHNNMRCVNKLNQNPSNFLNTFPLEVDAGLMAFSGAANAQAREISTASTPFNRVALQQMLDSWPLT* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0130 350 Gene3D NAC domain 31 177 IPR036093 GO:0003677|GO:0006355
Gso4g0130 350 ProSiteProfiles NAC domain profile. 22 173 IPR003441 GO:0003677|GO:0006355
Gso4g0130 350 MobiDBLite consensus disorder prediction 184 203 - -
Gso4g0130 350 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 12 302 - -
Gso4g0130 350 MobiDBLite consensus disorder prediction 182 203 - -
Gso4g0130 350 Pfam No apical meristem (NAM) protein 23 149 IPR003441 GO:0003677|GO:0006355
Gso4g0130 350 SUPERFAMILY NAC domain 17 173 IPR036093 GO:0003677|GO:0006355
Gso4g0130 350 PANTHER PROTEIN CUP-SHAPED COTYLEDON 3 12 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0130 Gso-Chr4 1140251 1142989 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0130 1 179 NAC Transcription Factor Family AT1G76420 73.743 4.46e-95 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gso4g0130 NAM 8.9e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0130 - - gmx:100808967 699.123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0130 4 1140251 1142989 Gso4g0130 4 1140251 1142989 ECH
Gso4g0130 4 1140251 1142989 Gso6g0118 6 1125866 1128443 GST