Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0128 ATGTCGGGATCTGACATGGCAAGCAGGGAGCAATTCACGGTTGGGATGCACAAACCCCAACCCCAACCCCAACAACAACAACCTCAGCTTCATCAAAACAACATGCGTATGGACTATGCTGCTGCTGACGGCACCGCTGTTTTCGCCCCTCCTACCGTTACCGTTAACATTAACGGCGGAGAATCCTCTCCGGCGGTGCCTCCGGGCCTGGGCCTGGCCCAGCCCCAGCCCCAGCCCCAGCCCATGATGGTTAACTCCTCCGAACCAATTAAGAGAAAGAGGGGAAGGCCCAGGAAATATGGGCCTCACGGTGGCATGGCCTTGGCTTTGAACACCACCACTCCTCCTGGCGGCGCCGCCGTGCCGGTTGGCCAGTCCGGTGGGGCATTTCCACCGGCTCCTCTTTCGGATTCGGCCTCAGCTGGTACCGTGAAGCGCAGGGGCAGACCTCGTGGTTCTGTCAACAAGAATAAGAAGAATAACAGCTCTAAGTATTCTGGGCCAGGATCTTGGTTTACTCCGCATGTCATTACCGTGAAAGCTGGAGAGGATTTGTCAGCAAGAATTATGACAATTTCCCAGAGTAGTTCAAGAAATATTTGCATCTTAACAGCAAATGGAGCCATATCTAATGTGACACTTCGACAACCTGCCTCATCTGGAGGAACTGTGACTTATGAGGGGCGATTTGAGATCCTATCACTTGGAGGTTCTTTTTTTCTTGCTGGAACTGAAAGGGCTGGGGGGCTGAGTGTGTCCTTGTCAGGGCCAGATGGCCGTGTCTTGGGCGGTGGAGTTGCAGGTCTTTTGGTAGCTGCTTCCCCTGTTCAGATTGTTTTGGCAAGCTTTGTTTCTGATGTTCGCAAGCACTTCAAGCATGCAAAGCAGATGCAGAATGCAAAGGTTTCCATAGCAGCAGGCCAAAGCAGCTCACCATCAAGAGGCACTCTCAGTGAGTCTTCAGGTGGGGTTGGGAGTGGGAGCCCACTAAACCAAAGCACAGGAGCCTGCAACAACACCATGAACAACTGTACCACCCCAACACAAAGCTTTCAAGGCATGCCCTGGAAGTAG 1074 0.5307 MSGSDMASREQFTVGMHKPQPQPQQQQPQLHQNNMRMDYAAADGTAVFAPPTVTVNINGGESSPAVPPGLGLAQPQPQPQPMMVNSSEPIKRKRGRPRKYGPHGGMALALNTTTPPGGAAVPVGQSGGAFPPAPLSDSASAGTVKRRGRPRGSVNKNKKNNSSKYSGPGSWFTPHVITVKAGEDLSARIMTISQSSSRNICILTANGAISNVTLRQPASSGGTVTYEGRFEILSLGGSFFLAGTERAGGLSVSLSGPDGRVLGGGVAGLLVAASPVQIVLASFVSDVRKHFKHAKQMQNAKVSIAAGQSSSPSRGTLSESSGGVGSGSPLNQSTGACNNTMNNCTTPTQSFQGMPWK* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0128 357 MobiDBLite consensus disorder prediction 304 334 - -
Gso4g0128 357 Pfam Plants and Prokaryotes Conserved (PCC) domain 174 284 IPR005175 -
Gso4g0128 357 Gene3D - 174 306 - -
Gso4g0128 357 ProSiteProfiles PPC domain profile profile. 166 305 IPR005175 -
Gso4g0128 357 SUPERFAMILY AF0104/ALDC/Ptd012-like 170 287 - -
Gso4g0128 357 SMART AT_hook_2 91 103 IPR017956 GO:0003677
Gso4g0128 357 SMART AT_hook_2 144 156 IPR017956 GO:0003677
Gso4g0128 357 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 10-LIKE ISOFORM X1 6 341 - -
Gso4g0128 357 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 6 341 IPR039605 GO:0003680
Gso4g0128 357 MobiDBLite consensus disorder prediction 1 39 - -
Gso4g0128 357 CDD DUF296 173 283 IPR005175 -
Gso4g0128 357 MobiDBLite consensus disorder prediction 1 34 - -
Gso4g0128 357 MobiDBLite consensus disorder prediction 52 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0128 Gso-Chr4 1124352 1128353 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0128 1 357 AT-hook Motif Nuclear Localized (AHL) Family AT2G33620 45.431 4.78e-76 236
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0128 4 1124352 1128353 Gso4g0128 4 1124352 1128353 ECH
Gso4g0128 4 1124352 1128353 Gso6g0115 6 1107479 1111544 GST