Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0123 ATGGAGGATGATGAGAAACCCACGGGTAACTCCCATGGCATTGCTGATATGGATGTTGCTGATGCTGCTTTGCAAGGCCAACGTGTTGCTTCTTCCCCTGCTCCGCTACAACAGGATCAAGTAATGGTCGAACAGGGTCATGATATCAAAAACGGCGATTCTGGTCCTGCTCATTTGCCAGAAGCCAGTGTAATTAACAATAATCAGTTTGAAGTTGAAGATGCTCAGACCGTTTCGCATCAGGAACTGACCACTCCAAAGCCTAAAGAAAAAAACGTCAGAGAAATGAAGAATGTGCTAAATGATACTGAGATGACTGATTATGATGAGTATGGCACGCCTCTGGATCGAGAAACATTCATGAAAGAGCTTGAGACTTTCTACAGAGAGCGGTCCTTGGAATTTAAGCCTCCTAAGTTTTATGGAGAGCCACTCAATTGCCTTAAGTTGTGGAGAGCTGTTATCAGACTAGGCGGCTATGATGTGGTAACTGGATCCAAGTTGTGGCGGCAAGTAGGAGAGTCTTTCCACCCCCCAAAGACCTGCACTACAGTCTCATGGACATTTAGAATTTTTTATGAGAAGGCACTTTTAGAGTATGAAAGGCATAAGAGAGAGATTGGGGAGCTACAGCTCCCTGTTGGACCATTCCATCAATCTTCAAATGTGGAAAAAGAGCCTGCTGTTTACCAGACTCCAGGCTCAGGTAGAGCAAGAAGGGATTCCGCAGCACGTGCAATGCAAGGTTGGCATGCTCAGCGCCTTCTTGGATATGGTGAGGTTGCTGAGCCAGTTATTAAGGACAAGAACTTCAGTTCCACACAAAAGCGTGAAAAGAACCTAAAAAGTATTGGTATGATCAATAAACAGAGGACACTGTCTGGTCTGGAGCATGCTGAGAAATCTGCAAATATTGAAGGAGATCAACAATTGGTCACAGCGGTAGTGGACGTTGGACCCCCAGCTGACTGGGTGAAGATCAATGTGCGGGAAACTAAGGATGGTTTTGAGGTGTATGCCCTTGTTCCTGGGCTCCTTCGTGAGGAGGTGCGAGTCCAATCAGATCCGGTTGGACGTCTTGTTATAACTGGTGTGCCAGAACACCTTGACAATCCATGGGGAATTACCCCCTTCAAAAAGGTTGTGAACTTACCTACAAGAATTGATTCGCTTCAGACATCTGCTGTTGTTAGTTTGCATGGTCGACTATTTGTACGCGTTCCTTTTGAGCAGGGAGCTGTGTGA 1245 0.4594 MEDDEKPTGNSHGIADMDVADAALQGQRVASSPAPLQQDQVMVEQGHDIKNGDSGPAHLPEASVINNNQFEVEDAQTVSHQELTTPKPKEKNVREMKNVLNDTEMTDYDEYGTPLDRETFMKELETFYRERSLEFKPPKFYGEPLNCLKLWRAVIRLGGYDVVTGSKLWRQVGESFHPPKTCTTVSWTFRIFYEKALLEYERHKREIGELQLPVGPFHQSSNVEKEPAVYQTPGSGRARRDSAARAMQGWHAQRLLGYGEVAEPVIKDKNFSSTQKREKNLKSIGMINKQRTLSGLEHAEKSANIEGDQQLVTAVVDVGPPADWVKINVRETKDGFEVYALVPGLLREEVRVQSDPVGRLVITGVPEHLDNPWGITPFKKVVNLPTRIDSLQTSAVVSLHGRLFVRVPFEQGAV* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0123 414 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 5 54 411 - -
Gso4g0123 414 Gene3D - 303 412 IPR008978 -
Gso4g0123 414 SMART bright_3 115 206 IPR001606 GO:0003677
Gso4g0123 414 SUPERFAMILY HSP20-like chaperones 322 409 IPR008978 -
Gso4g0123 414 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 313 414 IPR002068 -
Gso4g0123 414 CDD ACD_sHsps-like 328 408 - -
Gso4g0123 414 Pfam ARID/BRIGHT DNA binding domain 117 201 IPR001606 GO:0003677
Gso4g0123 414 SMART ARID_2 111 201 - -
Gso4g0123 414 Gene3D - 115 212 IPR036431 GO:0003677
Gso4g0123 414 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 54 411 IPR045147 GO:0006357
Gso4g0123 414 MobiDBLite consensus disorder prediction 23 60 - -
Gso4g0123 414 CDD ARID 116 201 - -
Gso4g0123 414 ProSiteProfiles ARID domain profile. 114 205 IPR001606 GO:0003677
Gso4g0123 414 SUPERFAMILY ARID-like 102 212 IPR036431 GO:0003677
Gso4g0123 414 Pfam Hsp20/alpha crystallin family 329 410 IPR002068 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0123 Gso-Chr4 1081872 1090781 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0123 84 411 ARID Transcription Factor Family AT1G76510 68.389 4.53e-154 441
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Gso4g0123 HSP20 0.00019 CL0190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0123 - - gmx:100777965 834.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0123 4 1081872 1090781 Gso4g0123 4 1081872 1090781 ECH
Gso4g0123 4 1081872 1090781 Gso6g0109 6 1063649 1071874 GST