Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0120 ATGTCGAGCTCACTGGCGGAGAAGTCCACCTTCTCTCGGACTTGTACTCTTCTGAGGCAATACCTCAAGGAGAAGGGCAGCTTTGGAGACCTTACCCTCGGGATTGCATTGCCATGCACCAACGGTTCCCCTGACACATCATGTCACTCTGCAACAACCATGCAGTCTGTTTATTCTCGCCACTTGGAGATTCCAACTTTTATTAACCCAAGCTCTACGGAGAAGGAGGCTAAAGCTGCTCAGTTGACTATCTTCTATGATGGGCAAGTTGTTGTGTTTGATGATTTTCCTGCTGATAAAGTGCAGGAGATGATGTCTTTGGCCTTGGCCACCAAGGGAATTTCCCAAAGCCAGAACTCCTCTGCATATGCTCAAACTCATAACCAGCAAGGAAATAATCATCCTTCAAGTATTCCTAATATCATTCCTCAAGCGCCATCCACACCAATTGTTAATGACATGCCAATCGCCAGGAAAGCTTCCCTTCATCGGTTCCTTGAGAAGAGGAAAGATAGAATTGCTGCCAAATCGCCATATCAAACAAACAGTCCTATCTCTGCTCCTAATAAGCAGGCCGAATCCCTAGATGCTAAACCACACATCTGA 606 0.462 MSSSLAEKSTFSRTCTLLRQYLKEKGSFGDLTLGIALPCTNGSPDTSCHSATTMQSVYSRHLEIPTFINPSSTEKEAKAAQLTIFYDGQVVVFDDFPADKVQEMMSLALATKGISQSQNSSAYAQTHNQQGNNHPSSIPNIIPQAPSTPIVNDMPIARKASLHRFLEKRKDRIAAKSPYQTNSPISAPNKQAESLDAKPHI* 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0120 201 Pfam Jas motif 155 180 IPR018467 -
Gso4g0120 201 MobiDBLite consensus disorder prediction 171 201 - -
Gso4g0120 201 PANTHER PROTEIN TIFY 10A 6 192 - -
Gso4g0120 201 ProSiteProfiles Tify domain profile. 75 110 IPR010399 -
Gso4g0120 201 MobiDBLite consensus disorder prediction 176 190 - -
Gso4g0120 201 MobiDBLite consensus disorder prediction 119 147 - -
Gso4g0120 201 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 6 192 IPR040390 -
Gso4g0120 201 SMART tify_2 75 110 IPR010399 -
Gso4g0120 201 Pfam tify domain 77 108 IPR010399 -
Gso4g0120 201 MobiDBLite consensus disorder prediction 119 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0120 Gso-Chr4 1045527 1047448 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0120 6 187 Tify Gene Family AT1G19180 38.496 8.01e-34 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Gso4g0120 tify 4.5e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0120 K13464 - gmx:100807356 399.438