Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0115 ATGGCTTCAAATTCCGATAAGGATTCCCCAACACCACCTTCACCTGATTCATCTTCATCCCAATCCCCGCCATCATCTCCTCCACCATCCCAAGATAGTTCATCGCCCCCACCATCGTCCCCCCCGCCATCATCCCCACCACCATCATCTTCGCCTCCTCCGTCCCCGCCACCGCCGTCATCAAATGATCAGAAATCCCCGCCTCCGCCATCTGACTCATCCTCCTCCCCCCCATCTCCACCACCGCCGCCACCTCCTGATAAGGATTCAGGCAGCCACCGGTCGCCACCGCCTCCGCCACATTCAAGACATGAGTTTTCTCCTCCTCCGCCTCCGAACCACCGGTTGTCTCCACCCAAGTCGTCATCATCAGGTTCCTCGGATGGATTGAAAGACAGTGAAAGCCATTCATTGAGCATGCCAGTTATAATAGGAATTGCAGCTGGAGCTGGCATTTTGCTCCTTCTCCTTCTCGTAGTCGTTTGTGCGTGTTCAAGAAGGAAGAAGAGATCTCAGCCTTCCGTTAGTTACTACGCTAATCAACCTTCAGATGATGGCTATTATAAAAGACCAAGGGGAGGTCAAAATCAGTATGGGTACAATAACAACGGCGAGCACGTTCTGAATATTCCTCCACCTCCAGGAGCAGGTTGGGGAGCAGCACCCCAACCTCCCCAGATGATTAGTAGTGACATGAGCAACTCCAGTTTCTCGGGTTCCCACGGTCCCGTTTTGCCACCTCCACACCCTACAGTGGCCCTTGGATTCAACCAAAGCTCCTTCACTTATGACGAGCTCTCAGCTGCCACCGGAGGGTTTAGCCAACGCAACTTGCTCGGTCAAGGTGGGTTCGGATATGTGCACAAAGGTGTTCTACCCAATGGTAAGGAAATTGCAGTGAAGAGCCTCAAGTCCACCGGGGGACAAGGTGACAGAGAATTCCAAGCTGAGGTTGATATTATTAGCCGTGTCCATCATCGCCATCTTGTGTCACTTGTTGGCTATTGCATGTCAGAAAGCAAAAAACTTCTGGTTTATGAGTTTGTGCCTAAAGGGACCCTTGAATTCCATCTTCATGGAAAGGGCCGACCTGTCATGGATTGGAATACCAGGCTCAAAATTGCGATTGGATCGGCCAAAGGACTTGCTTATTTACATGAGGATTGTCACCCTCGTATCATTCACCGAGACATAAAGGGTGCGAACATTCTACTTGAGAACAACTTCGAAGCCAAAGTGGCAGATTTTGGGTTGGCAAAGATTAGTCAAGACACTAACACTCATGTTTCTACTCGTGTAATGGGAACATTCGGTTATATGGCTCCAGAGTATGCATCAAGTGGTAAGCTAACTGACAAATCTGATGTGTTCTCGTTCGGTATTATGCTTTTGGAGCTCATAACTGGTAGGCGCCCTGTGAACAACACTGGGGAATATGAAGATACTTTGGTCGACTGGGCAAGACCACTTTGTACAAAGGCAATGGAAAATGGAACTTTTGAAGGACTAGTGGATCCACGTTTAGAGGATAATTACGACAAGCAGCAAATGGCTTCTATGGTGGCTTGTGCTGCTTTTAGCGTTAGGCACTCAGCAAAGAGGCGCCCAAGAATGAGTCAGATTGTACGAGTACTGGAGGGTGATGTGTCACTAGATGCCCTTAATCATGAGGGAGTGAAACCTGGACAAAGTTCAATGTTCAGCAGCGCGAGCAGGGAGTATGGTGCGGAGGCATACGGTGCTGACATGATGAGATTCAGGAAACTAGCATTAGATAGTGGCGTGGGAAGCAGTGAGTATGGTGGAACCAGTGAGTATGGCCTTAACCCTTCCATCTCAAGCAGTGAACAATCATCTGCTGAATATGCCAGGAGGACCACAGGAGGAGGCCGGATGCACACTCCTTGA 1908 0.4963 MASNSDKDSPTPPSPDSSSSQSPPSSPPPSQDSSSPPPSSPPPSSPPPSSSPPPSPPPPSSNDQKSPPPPSDSSSSPPSPPPPPPPDKDSGSHRSPPPPPHSRHEFSPPPPPNHRLSPPKSSSSGSSDGLKDSESHSLSMPVIIGIAAGAGILLLLLLVVVCACSRRKKRSQPSVSYYANQPSDDGYYKRPRGGQNQYGYNNNGEHVLNIPPPPGAGWGAAPQPPQMISSDMSNSSFSGSHGPVLPPPHPTVALGFNQSSFTYDELSAATGGFSQRNLLGQGGFGYVHKGVLPNGKEIAVKSLKSTGGQGDREFQAEVDIISRVHHRHLVSLVGYCMSESKKLLVYEFVPKGTLEFHLHGKGRPVMDWNTRLKIAIGSAKGLAYLHEDCHPRIIHRDIKGANILLENNFEAKVADFGLAKISQDTNTHVSTRVMGTFGYMAPEYASSGKLTDKSDVFSFGIMLLELITGRRPVNNTGEYEDTLVDWARPLCTKAMENGTFEGLVDPRLEDNYDKQQMASMVACAAFSVRHSAKRRPRMSQIVRVLEGDVSLDALNHEGVKPGQSSMFSSASREYGAEAYGADMMRFRKLALDSGVGSSEYGGTSEYGLNPSISSSEQSSAEYARRTTGGGRMHTP* 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0115 635 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK5 10 595 - -
Gso4g0115 635 MobiDBLite consensus disorder prediction 171 199 - -
Gso4g0115 635 Gene3D Phosphorylase Kinase; domain 1 250 348 - -
Gso4g0115 635 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 10 595 - -
Gso4g0115 635 MobiDBLite consensus disorder prediction 1 135 - -
Gso4g0115 635 SUPERFAMILY Protein kinase-like (PK-like) 253 545 IPR011009 -
Gso4g0115 635 MobiDBLite consensus disorder prediction 1 15 - -
Gso4g0115 635 SMART serkin_6 273 508 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso4g0115 635 ProSiteProfiles Protein kinase domain profile. 273 559 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso4g0115 635 MobiDBLite consensus disorder prediction 16 117 - -
Gso4g0115 635 MobiDBLite consensus disorder prediction 118 134 - -
Gso4g0115 635 MobiDBLite consensus disorder prediction 599 635 - -
Gso4g0115 635 Pfam Protein tyrosine and serine/threonine kinase 276 543 IPR001245 GO:0004672|GO:0006468
Gso4g0115 635 Gene3D Transferase(Phosphotransferase) domain 1 349 557 - -
Gso4g0115 635 MobiDBLite consensus disorder prediction 599 624 - -
Gso4g0115 635 ProSitePatterns Protein kinases ATP-binding region signature. 279 301 IPR017441 GO:0005524
Gso4g0115 635 ProSitePatterns Serine/Threonine protein kinases active-site signature. 393 405 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0115 Gso-Chr4 1016975 1020400 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0115 148 627 Trihelix Transcription Factor Family AT1G70460 50.101 9.19e-151 451
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Gso4g0115 PK_Tyr_Ser-Thr 5.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0115 - - gmx:100806299 988.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0115 4 1016975 1020400 Gso4g0115 4 1016975 1020400 ECH