Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0106 ATGTTGGGCTATGCGAACCCGTCGGGGAATCTGGCTGTGGATGGAGACATGACAGTGTTGGAAAGACAGAGGGCGAGGATGAAGTGGCAAGAAGAGCAAGAGTACTTTTCTGGAAACAGCTTCAACGGTGTTTTTTCTTCTTCTTCTTCTCTGCACGTTCCAGATTCCATTATGGTGGCTGCTGACTCCGGTTGTGCACTTGCTGAGGTCGTGGCTCAGGCTCAGCCTCGCTCAATCAATAAGCCATCTGCTGCTCCTGGGCTTCATGCCAATTCTTCTTCTATTTCAAGGACTTTTAGTTGTCCACCTGCTCTGGTGGACCCCGAGCCCAAGCCCACTGACTCCTCAATTGGGAAAGACAGTTTCAAGAAGAGGAAAACTGACAAGCCTCACAATCCCAAGGTTGTTGCAGAAAATGAGAACAAAGACAAGAGGATCAAAGTCGGCGCTGATGATGGAGAATCCAAAATCACCAAGTGTAACACAATAAACACAAATACCAACAACAAAGAAACTTGCACAGATACTTCAAATTCAAAGCAAAATTCAAAAGCCTCCGAAAAACCTGATTACATTCATGTCCGAGCACGTCGGGGCCAAGCCACCGATAGTCATAGCTTAGCCGAAAGAGTTAGAAGGGAAAAAATTAGTGAGAGAATGAACTATTTGCAAGATTTAGTACCCGGTTGCAACAAAGTCACGGGAAAAGCTGGAATGCTTGATGAAATCATCAACTATGTTCAATCTCTTCAACGACAAGTTGAGTTTCTCTCAATGAAATTAGCTGCTGTGAACCCAAGGCTTGACTTCAGTATGGATGATCTATTTGACAAAGATGTGTTTCCTACTTGTGCTGCAAATTTTCCAAACATTGGAATGTCATCAACATCATCAGACATTACTAACCCTGCCTATCTTCCGTTTAATTCACCGCAGCAAATTTTTCAATATGATGGATTAGACACGGGGATTAACCCTTCTGATGTGGGGCTTAGAAGGACCATAAGTGCCCCCGTATCAATGCCTGAAACATATCTTCAATCGTCCTGTTTCACACAAATGCTACCCTCCTCAACATGGGAAGGTGATTTCCAAAACCTTTGCAATTTTGATGTTGATCAAGCACGAGCCACATCTTTCCCTTCTCAGCTGTTATCAGGTCTGGTTGAAGCTGGCAATCTAAAGATGGAGATGTAG 1197 0.4403 MLGYANPSGNLAVDGDMTVLERQRARMKWQEEQEYFSGNSFNGVFSSSSSLHVPDSIMVAADSGCALAEVVAQAQPRSINKPSAAPGLHANSSSISRTFSCPPALVDPEPKPTDSSIGKDSFKKRKTDKPHNPKVVAENENKDKRIKVGADDGESKITKCNTINTNTNNKETCTDTSNSKQNSKASEKPDYIHVRARRGQATDSHSLAERVRREKISERMNYLQDLVPGCNKVTGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRLDFSMDDLFDKDVFPTCAANFPNIGMSSTSSDITNPAYLPFNSPQQIFQYDGLDTGINPSDVGLRRTISAPVSMPETYLQSSCFTQMLPSSTWEGDFQNLCNFDVDQARATSFPSQLLSGLVEAGNLKMEM* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0106 398 MobiDBLite consensus disorder prediction 167 185 - -
Gso4g0106 398 MobiDBLite consensus disorder prediction 78 100 - -
Gso4g0106 398 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 200 250 IPR011598 GO:0046983
Gso4g0106 398 MobiDBLite consensus disorder prediction 113 143 - -
Gso4g0106 398 PANTHER TRANSCRIPTION FACTOR BHLH63-LIKE 15 377 - -
Gso4g0106 398 MobiDBLite consensus disorder prediction 78 143 - -
Gso4g0106 398 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 15 377 IPR024097 GO:0006355
Gso4g0106 398 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 198 269 IPR036638 GO:0046983
Gso4g0106 398 CDD bHLH_AtBPE_like 190 275 - -
Gso4g0106 398 MobiDBLite consensus disorder prediction 167 189 - -
Gso4g0106 398 Pfam Helix-loop-helix DNA-binding domain 204 251 IPR011598 GO:0046983
Gso4g0106 398 Gene3D - 197 271 IPR036638 GO:0046983
Gso4g0106 398 SMART finulus 206 256 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0106 Gso-Chr4 929790 932249 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0106 16 367 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G34530 39.946 1.55e-64 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso4g0106 HLH 1.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0106 - - gmx:100798855 758.059