Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0084 ATGGCAACTTACTATACGAGTTCAAGTAATGAAAGGAACGCAGTGCCTATGCTGTGTCTTAGGGAACCTTTGCCTAATTCATATCCCGAGACACCAGTTTTGCCGAGCAATATGACATTTTATATGAACTCTGGATCATATTCAGAAGCACTGTCTGGCAATTCTCAGCAGCAAAACAATTGCTTTGTGATTCCATCACCATCAGTAGGGGCTTCACATTCCACTCCTGAACAACAAGAAATCTTTGCCAATATTAGTGGGTTCCAAACTGGGTTTCATGATTTCAGTGCATGGAGGGAAGGTAGAAGTGAAATGTTAGTCAGACAACCTATGGATGGACAGAACTTACAAGGTCATGGATTATCTCTCAGCCTTGGAACCCATATACCCTCAGGAATTCATAGTTCAAGTTTTGATTCATTTTTGGGTACTAATCCTTCAATTTCGGGTAATGAGGCCTACCAAAATGATTCATCTAGAGATGAGGGTATGAGACATTCTGAAAATCTTCCACCTGGCTTACCTGAAGCTAATCAAGATTTGGCCAAAGCGGATTTTTCATTTCATGGAATGTCTGGTGTTGGAAAAACAGTTCCTAGCTCCAAATACCTCAAGACAGTGCAACTACTACTTGATGAAGTTGTTGACATCCGAAAAGCTATTAAAAGACCTGCTATGAAAAGTCATAGCACACATGAGAAATCTAAGAAGGACTCTAAGGAGGATGATGAGCAACTAGAAAACGACAGGCCTTCTGCAAATGGAGTGCCTAATTCTCAAGCTTCAACTGGTAAGACCTCTTGTGAGCTTTCACATGCTGAAAAACAAGATCTGCACCACAAGTTAACAAAGCTTTTGTCAATGTTGGACGAGGTTGACAATAGGTATAAACAATATTATCAGCAGATGCAGACTGTAGTGTCATCATTTGATGTGATAGCAGGATGTGGAGCAGCTAAACCATACACAGCCCTTGCTCTGCAAACCATTTCATGCCATTTTCGGTGTTTGCGTGATGCAATCACTGGTCAAATCAGTGCAACACAAAAGAACCTTGGAGAGCAAGATGCTTCTGGAAGTAACAATGGAGTTGGAATGGCAAGACTAAAGTATGTGGACCAACAAATCCGACAACAGAGGGTTATTCAGCAGTTTGGCATGATGCAACATGCATGGAGACCACAAAGGGGGCTTCCAGAAAGCTCTGTTTCAATTCTTCGCGCTTGGCTTTTTGAGCATTTCCTTCATCCCTATCCAAAGGATTCTGATAAGATCATGCTAGCAAGACAGACAGGCTTGACCAGAAGTCAGGTGTCAAATTGGTTTATAAATGCTCGAGTGCGTCTATGGAAACCTATGATTGAAGAGATGTACAAGCAAGATAATTGTATTGCTGGCATGGACTCAAATTCTTCATCTGAAAATGTGTCCAAGGTAACAAAAAGTTATGTCAAGACCTCCAATGATGTGGGTGATGATTCGCAGCACTGTCAAAGTCCAATTGTGGCCGATACAAATCACAGTGGTGGACAAGCTAAGGACCTCAGACATGATCAGGCTCTTGATACAGAAATGATGGCATCCATTGGATTAGCTAGTCTCATAAATGGAGGTTATGGGGCTGAAACTGAACATAGGCGAAATTTGGATGATTGTGGTCTCTTCTCTAATGACACAGTTGTTCAGTCTGATGGAGCTACTAATAAGAGGTTTGTGTCAGTTGGTCCAACATGCCAAATGCCAGAGTCTGAGAGGTTCAAGTCAGGAAGTGGAGTGTCTCTAACATTGGGTTTGCAGCATTGTGAAGGAGGTAATTTTTTGCCTGGTAAGACCCATCTCAGTTTGGTTTCCATGAGGGAGGACGACATCTCCAAAGCGACCGCAGCTTCAACAGTTGGAGTAGAGACAACAGAACTTGAGTGCATTGGTGCTGGAAACCAACAACAAAGGTTAAATTCACCTCATATGCTACATGATTTTGAAGTATGA 1989 0.4208 MATYYTSSSNERNAVPMLCLREPLPNSYPETPVLPSNMTFYMNSGSYSEALSGNSQQQNNCFVIPSPSVGASHSTPEQQEIFANISGFQTGFHDFSAWREGRSEMLVRQPMDGQNLQGHGLSLSLGTHIPSGIHSSSFDSFLGTNPSISGNEAYQNDSSRDEGMRHSENLPPGLPEANQDLAKADFSFHGMSGVGKTVPSSKYLKTVQLLLDEVVDIRKAIKRPAMKSHSTHEKSKKDSKEDDEQLENDRPSANGVPNSQASTGKTSCELSHAEKQDLHHKLTKLLSMLDEVDNRYKQYYQQMQTVVSSFDVIAGCGAAKPYTALALQTISCHFRCLRDAITGQISATQKNLGEQDASGSNNGVGMARLKYVDQQIRQQRVIQQFGMMQHAWRPQRGLPESSVSILRAWLFEHFLHPYPKDSDKIMLARQTGLTRSQVSNWFINARVRLWKPMIEEMYKQDNCIAGMDSNSSSENVSKVTKSYVKTSNDVGDDSQHCQSPIVADTNHSGGQAKDLRHDQALDTEMMASIGLASLINGGYGAETEHRRNLDDCGLFSNDTVVQSDGATNKRFVSVGPTCQMPESERFKSGSGVSLTLGLQHCEGGNFLPGKTHLSLVSMREDDISKATAASTVGVETTELECIGAGNQQQRLNSPHMLHDFEV* 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0084 662 Pfam Associated with HOX 198 342 IPR006563 -
Gso4g0084 662 SUPERFAMILY Homeodomain-like 393 459 IPR009057 -
Gso4g0084 662 MobiDBLite consensus disorder prediction 223 272 - -
Gso4g0084 662 MobiDBLite consensus disorder prediction 144 178 - -
Gso4g0084 662 MobiDBLite consensus disorder prediction 223 249 - -
Gso4g0084 662 SMART HOX_1 392 456 IPR001356 GO:0003677
Gso4g0084 662 ProSiteProfiles 'Homeobox' domain profile. 389 452 IPR001356 GO:0003677
Gso4g0084 662 Gene3D - 388 465 - -
Gso4g0084 662 Pfam Homeobox KN domain 409 448 IPR008422 GO:0003677|GO:0006355
Gso4g0084 662 SMART prehox3 192 343 IPR006563 -
Gso4g0084 662 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 10 56 613 - -
Gso4g0084 662 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 56 613 - -
Gso4g0084 662 MobiDBLite consensus disorder prediction 251 269 - -
Gso4g0084 662 CDD homeodomain 392 453 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0084 Gso-Chr4 770167 774486 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0084 27 660 Homeobox Transcription Factor Family AT4G34610 41.331 5.04e-131 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Gso4g0084 POX 3.9e-48 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0084 - - gmx:100801522 1312.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0084 4 770167 774486 Gso4g0084 4 770167 774486 ECH
Gso4g0084 4 770167 774486 Gso6g0075 6 760210 764194 GST