Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0083 ATGGCCAAACCGAAGGCTCCAAGACGAACCCTAGAGTCATACTCAGTCAAACACATAAGCAAAACCATTAGAGCTGGCGATTGCGTGCTCATGCGGCCCTCCGATCTGTCGAAACCGTCGTACGTGGCGAGGATCGAGCGGATCGAAGCCGACGCGCGCGGCTCCAACGTGAAGATTCACGTCCGGTGGTACTACCGGCCGGAGGAGTCAATCGGCGGCCGCCGCCAGTTTCATGGCTCCAAGGAGGTTTTCCTCTCCGATCACTTCGATGTTCAGAGCGCCGACACAATCGAAGCCAAGTGTACGGTCCACAGCTTCAAGAGCTACACGAAGCTCGATGCTGTCGGAAACGACGATTTCTTCTGTCGTTTTGAGTACAATTCCTCCACCGGCGCCTTCAATCCTGATAGAGTTGCTGTGTATTGTAAATGTGAGATGCCTTACAACCCTGATGACCTAATGGTCCAATGTGAGGGCTGCACTGACTGGTTCCATCCTGCATGTATAGACATGACTGTGGAAGAAGCCAAAAGACTTGACCACTTCTTTTGTGAAAATTGCTCTGCTGAAGGTCAAAAAAAGTTGCAAAACTCTCATTCTGCTTCTAGACACTCAGATACAAAGGTGGATACTAAACGCCGTCGTAGGTAA 651 0.5084 MAKPKAPRRTLESYSVKHISKTIRAGDCVLMRPSDLSKPSYVARIERIEADARGSNVKIHVRWYYRPEESIGGRRQFHGSKEVFLSDHFDVQSADTIEAKCTVHSFKSYTKLDAVGNDDFFCRFEYNSSTGAFNPDRVAVYCKCEMPYNPDDLMVQCEGCTDWFHPACIDMTVEEAKRLDHFFCENCSAEGQKKLQNSHSASRHSDTKVDTKRRRR* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0083 216 Gene3D - 2 135 IPR043151 -
Gso4g0083 216 Pfam BAH domain 22 136 IPR001025 GO:0003682
Gso4g0083 216 PANTHER OS08G0421900 PROTEIN 1 216 - -
Gso4g0083 216 Pfam PHD-finger 141 189 IPR019787 -
Gso4g0083 216 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 136 203 IPR013083 -
Gso4g0083 216 PANTHER CHROMATIN REMODELING PROTEIN SHL 1 216 IPR045205 GO:0006325|GO:0035064
Gso4g0083 216 MobiDBLite consensus disorder prediction 195 216 - -
Gso4g0083 216 ProSiteProfiles Zinc finger PHD-type profile. 139 190 IPR019787 -
Gso4g0083 216 SUPERFAMILY FYVE/PHD zinc finger 130 193 IPR011011 -
Gso4g0083 216 SMART BAH_4 21 137 IPR001025 GO:0003682
Gso4g0083 216 ProSiteProfiles BAH domain profile. 21 137 IPR001025 GO:0003682
Gso4g0083 216 ProSitePatterns Zinc finger PHD-type signature. 142 187 IPR019786 -
Gso4g0083 216 SMART PHD_3 141 188 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0083 Gso-Chr4 763445 767162 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0083 31 139 Core DNA Replication Machinery Family AT4G14700 31.193 2.02e-11 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gso4g0083 BAH 2.3e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0083 - - gmx:100526926 456.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0083 4 763445 767162 Gso4g0083 4 763445 767162 ECH
Gso4g0083 4 763445 767162 Gso6g0074 6 754012 757679 GST