Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0081 ATGCAAAGGGCGACGCAACAAGGCATATCAAGTTCAAGGGGTTCAAAGTGCCATGACTGTGGGAACCAAGCCAAGAAGGAATGTTCATACTCAAGGTGCAGAACTTGCTGTAAAAACAAAGGCTTTCACTGCCAAACCCATATCAAGAGCACTTGGACTCCTGTGGATAATATTAGGAGACGCCATATTCCTCAAAATCACAACCCATATTCAGGATTAGAGTTGAAATTTCCGGGTGCTACAAATTCGATGGCTATATTTCGGTGCGTGAAGGTTCGTTCTATGGATGATGCGGTTTATGAAATAGCGTATCAAACATCTGTGAACATCGGAGGGCATGTATTTAATGGACTACTATATGATCAAGGTCCTGACCAAAGCTATAATAATAATTGTAAGGGTGAAAGTTCCACGAGCCTTGTTGATCAGCAGCAGAATAATCTGGGTTTTGTGAATATTAATAATGGTTCAATCCAGAGTAGAGATAGTAGTGGTGCAAGTGCAAGTGCAACTATGGCTTCTGTTGGTCCGGAAGAGACTCTTTTAACTCCATCACCATATCCGTTTTCCCTTGCTTCTTTCAGGTCCGGTATGCCATATTAA 603 0.4196 MQRATQQGISSSRGSKCHDCGNQAKKECSYSRCRTCCKNKGFHCQTHIKSTWTPVDNIRRRHIPQNHNPYSGLELKFPGATNSMAIFRCVKVRSMDDAVYEIAYQTSVNIGGHVFNGLLYDQGPDQSYNNNCKGESSTSLVDQQQNNLGFVNINNGSIQSRDSSGASASATMASVGPEETLLTPSPYPFSLASFRSGMPY* 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0081 200 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 76 124 IPR006511 -
Gso4g0081 200 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 6 195 IPR007818 GO:0003700|GO:0006355
Gso4g0081 200 MobiDBLite consensus disorder prediction 1 23 - -
Gso4g0081 200 PANTHER BNAC01G23660D PROTEIN 6 195 - -
Gso4g0081 200 MobiDBLite consensus disorder prediction 1 18 - -
Gso4g0081 200 Pfam Domain of unknown function (DUF702) 75 125 - -
Gso4g0081 200 Pfam Domain of unknown function (DUF702) 14 63 - -
Gso4g0081 200 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 16 55 IPR006510 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0081 Gso-Chr4 747503 748879 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0081 14 131 C2H2 Transcription Factor Family AT2G21400 51.351 1.97e-42 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Gso4g0081 DUF702 1.7e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0081 - - gmx:106798607 417.157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0081 4 747503 748879 Gso6g0072 6 742138 743461 GST
Gso4g0081 4 747503 748879 Gso6g0221 6 2135425 2138024 GST
Gso14g1825 14 50621111 50623930 Gso4g0081 4 747503 748879 PCT
Gso17g2160 17 41244018 41246791 Gso4g0081 4 747503 748879 PCT
Gso4g0081 4 747503 748879 Gso14g1825 14 50621111 50623930 PCT
Gso4g0081 4 747503 748879 Gso17g2160 17 41244018 41246791 PCT