Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0077 ATGGAGGTAGCAGTGGCCAAAGCGTTGAAACCGAGTTTAAGGAGAGAGTTCATCGTTCAGCAAATGCTCTGCGAGGATATTTTCAGCCTGAACGCCAACACCGTCGCCGCCGGCGAAGATTTCTCCGTCGACGACCTATTTGACTTCTCTAACGGCTCTCTTCACAACGAACAACAACAAGAATACGACGAAGGGAAACAAAGTTTATCGGCTTCAGAGGACCGCGGAGAAGACGATTGCAACTCCAATTCCACCGGCGTTTCCTATGATTCACTTTTCTCCACCGAATTAGCCGTTCCGGCCGGTGATTTGGAGGACCTAGAGTGGGTTTCACACTTTGTGGACGATTCACTCCCGGAGCTGTCACTTCTATACCCGGTTCGTTCGGAGGAAGCAAACCGGTTTGTTGAACCGGAACCCTCAGCGAAGAAAACGCCTTGTTTTCCGTGGGAAATGAAAATAACGACCAAGGCGAGAACCGTACGGAATAGGAAGCCCAGCAACAGTCGCATGTGGTCGTTGGGTAGCCCGTTACTCTCGCTGCCGTCTTCGCCGTCTTCGCCGTCGTCGTGTTCTTCTTCGGTGAGGGAGCCGCCGGCTAAGAAGCAGAAGAAGCAAGCCCAGGCCCAGCCCGTTGGGGCCCAGATTCAGCGGCGGTGCAGTCACTGCCATGTGCAGAAGACGCCGCAGTGGAGGACCGGCCCACTGGGCGCGAAGACCCTCTGCAACGCGTGCGGGGTTCGGTACAAGTCGGGTCGGTTATTTTCGGAGTATAGACCGGCGTGTAGCCCCACCTTCTGCAGCGATATTCACTCCAATAGTCACCGTAAAGTGTTAGAGATTCGGAAGAGGAAAGAGGTGGCTCAACCGGATACCGGCTTGGCCCAGGCCCAGACTCAAATGGTTCCCACCTGCTGA 918 0.549 MEVAVAKALKPSLRREFIVQQMLCEDIFSLNANTVAAGEDFSVDDLFDFSNGSLHNEQQQEYDEGKQSLSASEDRGEDDCNSNSTGVSYDSLFSTELAVPAGDLEDLEWVSHFVDDSLPELSLLYPVRSEEANRFVEPEPSAKKTPCFPWEMKITTKARTVRNRKPSNSRMWSLGSPLLSLPSSPSSPSSCSSSVREPPAKKQKKQAQAQPVGAQIQRRCSHCHVQKTPQWRTGPLGAKTLCNACGVRYKSGRLFSEYRPACSPTFCSDIHSNSHRKVLEIRKRKEVAQPDTGLAQAQTQMVPTC* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0077 305 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 214 275 - -
Gso4g0077 305 MobiDBLite consensus disorder prediction 55 85 - -
Gso4g0077 305 MobiDBLite consensus disorder prediction 59 80 - -
Gso4g0077 305 MobiDBLite consensus disorder prediction 165 197 - -
Gso4g0077 305 PANTHER GATA TRANSCRIPTION FACTOR 1 305 - -
Gso4g0077 305 SMART GATA_3 214 268 IPR000679 GO:0006355|GO:0043565
Gso4g0077 305 Pfam GATA zinc finger 220 253 IPR000679 GO:0006355|GO:0043565
Gso4g0077 305 ProSitePatterns GATA-type zinc finger domain. 220 245 IPR000679 GO:0006355|GO:0043565
Gso4g0077 305 Gene3D - 213 264 IPR013088 GO:0006355|GO:0008270
Gso4g0077 305 PANTHER GATA TRANSCRIPTION FACTOR 1 305 - -
Gso4g0077 305 ProSiteProfiles GATA-type zinc finger domain profile. 214 250 IPR000679 GO:0006355|GO:0043565
Gso4g0077 305 MobiDBLite consensus disorder prediction 159 213 - -
Gso4g0077 305 CDD ZnF_GATA 219 276 IPR000679 GO:0006355|GO:0043565
Gso4g0077 305 PIRSF Txn_fac_GATA_plant 18 304 IPR016679 GO:0003677|GO:0005634|GO:0045893
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0077 Gso-Chr4 692819 694443 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0077 40 290 C2C2-Gata Transcription Factor Family AT4G36240 45.247 1.07e-54 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gso4g0077 GATA 4.1e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0077 - - gmx:100808242 577.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0077 4 692819 694443 Gso4g0077 4 692819 694443 ECH
Gso4g0077 4 692819 694443 Gso6g0068 6 685428 686962 GST