Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0066 ATGACGCGAGATATTTTGTTGAGTTTCATTAAACCCTACTATTTGTCTTCAACAAAGAAACACGAACGGAACAACATGGACGAGGAGGAGCCGCGTGACGAAGGACAACAAGGAGGTTCTGTCGAGCAAAGCCCAGAGCAACTGGTGGCCCGTGCCATAGCCCCCGTCAAGAAGGATTTCCTCCGTCCTCCTCCCGTTCGCTCTTCCTCTCCAAACGACGGCGTTTCCATTCCCAATGATAACAACAAGACCTCTGTTCTCGCCAAGGAGAAGAAGTCCAAGCGCCAACTCAAACGCGAACGTCGTCTGGAACAAAAGTCAGCACGAAACCTGTGTCCCGAAATTGCCAAAACAGGGGATGTTAGTTCATGTCCTTATAAAGACAAGTGTCGTTTCAGCCATGATTTGGAAGCCTTCAAGGCACAGAAACCTGCTGATCTAGAGGGGCAATGTCCTTTCTTTAAATCTGGAGGCGCTTGCCCATATGGTTTAGGGTGTAGATTTTCGAGTACGCATGAAGATGGTGTGCCTTCTGCCAATCTGAATGGTCTTAAGAATAATTCCGAGGTGAATGGGTTGAGCAAACATGTTCAAAAGCTTTTGTGGAAAAATAAGATGAGCTTCTCCAAGGCAGATGCCCAACTCAAAAGTCTAGGCCTCGTGGGAACCTCTAAGTCAAAAAGGAATGACTTGGAAAATAAAGATGAAGGTGACACTGGTTCAAATAAGTGTGATCATTCTGATTACAGTGGATCTTGTGTTGTTACCTCCGACTCATGTTGTAAGTTGGAATGCCCTGAAGAAGTTATGAAAGATGATGACAATGACATAGATGGAAAATCTGAATCTGATGTACTTTGCCCCCAGAAGAGAAGAAAAATTGCAGAAAATTGTGGTCCTATGGATGCAGAAAATGAAGGTGTTAGTGTTACTGAGCAAATTGTTGAAAGAAGTTGCACAAAATCTGAACCCGAAGCTGGAACCGATGCTCTAACCCCAGAAACTGATCTAAGCCTGAAGCTGCACTCACGTGAAAAGAAGCTGATTGATTTTAGGGAGAAGTTGTATCTCGCACCCTTGACCACTGTTGGCAATCTCCCTTTCCGAAGAGTTTGCAAAGTATTAGGAGCTGATGTAACTTGTGGTGAAATGGCAATGTGCACAAATCTTTTGCAGGGTCAAGCCTCTGAATGGGCATTGCTAAGACGTCATTCATCTGAAGATTTATTTGGTGTACAAATCTGTGGGGCATATCCTGATACTGTGGCACGAACAGTTGAACTAATAGAGCAAGAGTGTACAATAGATTTTATTGATATAAATATGGGTTGTCCTATTGACATTGTTGTGAATAAGGGTGCTGGATCAGCTCTTCTAACAAAACCAATGCGGATGAAAAGTATTGTAGAAGTTGCTTCAGGCACAGCGGAAAAACCAATAACTATCAAGGTACGGACTGCTTATTTTGAAGGGAAGAATCGCATTGATTCTCTGATAGCAGACATTGGCTCTTGGGGTGCCAGTGCTGTGACAATACATGGTAGGTCACGTCAACAACGCTATAGCAAGCTTGCTGACTGGGACTACGTATACCAGTGTGCCAGGAAAGCCCCTACTACATTGCCCGTAGTGGGGAATGGAGATGTTTTTTCATTTGTAGACTGGAACAACCACAGAACTGAATGCCCTGAACTTGCTACGGACATGGTTGCTCGTGGTGCACTGATTAAACCTTGGATATTTACTGAGATCAAGGAACAGAGACATTGGGACATCAGTTCTGGCGAGCGTCTAAATATTCTCAAAGATTTTGTGAATTTTGGTCTTGAACACTGGGGTTCTGACACAAAAGGGGTTGAGACAACAAGGCGGTTCTTGTTGGAATGGCTTAGCTACACTTTCAGGTATATACCTGTTGGTCTTTTGGATGTGGTTCCACAACGATTAAACTGGCGTCCACCATCTTACTATGGGCGTGATGAGCTTGAGACACTAATGGCCTCAGACTCTGCTGCCGATTGGATACGAATATCAGAGATGCTACTTGGCAAGGTTCCAGATGGCTTTACATTTGCTCCTAAGCATAAATCAAATGCTTACGATAGAGCTGAAAATGGTTGA 2121 0.4408 MTRDILLSFIKPYYLSSTKKHERNNMDEEEPRDEGQQGGSVEQSPEQLVARAIAPVKKDFLRPPPVRSSSPNDGVSIPNDNNKTSVLAKEKKSKRQLKRERRLEQKSARNLCPEIAKTGDVSSCPYKDKCRFSHDLEAFKAQKPADLEGQCPFFKSGGACPYGLGCRFSSTHEDGVPSANLNGLKNNSEVNGLSKHVQKLLWKNKMSFSKADAQLKSLGLVGTSKSKRNDLENKDEGDTGSNKCDHSDYSGSCVVTSDSCCKLECPEEVMKDDDNDIDGKSESDVLCPQKRRKIAENCGPMDAENEGVSVTEQIVERSCTKSEPEAGTDALTPETDLSLKLHSREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTVARTVELIEQECTIDFIDINMGCPIDIVVNKGAGSALLTKPMRMKSIVEVASGTAEKPITIKVRTAYFEGKNRIDSLIADIGSWGASAVTIHGRSRQQRYSKLADWDYVYQCARKAPTTLPVVGNGDVFSFVDWNNHRTECPELATDMVARGALIKPWIFTEIKEQRHWDISSGERLNILKDFVNFGLEHWGSDTKGVETTRRFLLEWLSYTFRYIPVGLLDVVPQRLNWRPPSYYGRDELETLMASDSAADWIRISEMLLGKVPDGFTFAPKHKSNAYDRAENG* 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0066 706 MobiDBLite consensus disorder prediction 16 106 - -
Gso4g0066 706 PANTHER TRNA-DIHYDROURIDINE(47) SYNTHASE [NAD(P)(+)]-LIKE 46 706 - -
Gso4g0066 706 SMART c3hfinal6 107 136 IPR000571 GO:0046872
Gso4g0066 706 SMART c3hfinal6 147 174 IPR000571 GO:0046872
Gso4g0066 706 PANTHER TRNA-DIHYDROURIDINE(47) SYNTHASE [NAD(P)(+)]-LIKE 46 706 - -
Gso4g0066 706 SUPERFAMILY FMN-linked oxidoreductases 354 667 - -
Gso4g0066 706 MobiDBLite consensus disorder prediction 69 84 - -
Gso4g0066 706 ProSitePatterns Uncharacterized protein family UPF0034 signature. 438 456 IPR018517 GO:0008033|GO:0017150|GO:0050660
Gso4g0066 706 MobiDBLite consensus disorder prediction 227 243 - -
Gso4g0066 706 ProSiteProfiles Zinc finger C3H1-type profile. 150 175 IPR000571 GO:0046872
Gso4g0066 706 Gene3D - 102 180 - -
Gso4g0066 706 Gene3D Aldolase class I 349 592 IPR013785 -
Gso4g0066 706 ProSiteProfiles Zinc finger C3H1-type profile. 106 137 IPR000571 GO:0046872
Gso4g0066 706 CDD DUS_like_FMN 354 589 IPR035587 -
Gso4g0066 706 MobiDBLite consensus disorder prediction 225 249 - -
Gso4g0066 706 Pfam Dihydrouridine synthase (Dus) 357 591 IPR035587 -
Gso4g0066 706 MobiDBLite consensus disorder prediction 16 36 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gso4g0066 Dus 3.5e-48 CL0036
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0066 K05544 - gmx:100783494 1444.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0066 4 576617 582031 Gso4g0066 4 576617 582031 ECH