Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0055 ATGGGGCTGAATGTTCATCGCGTACATTCTCCTACGCTGAAGTCGATAATACTATTACTTGCTCTCTGCACTTTATCAGATTGTTATGACCCATTGGATCCTAATGGGAACATTTCCGTAACTTTTGACATCTTCCAACGTACTCCAGATAATGGATATCTGGCAAGGGTGACCCTTCAAAACTACTATCAATATCGGCATGTAGACAAACCTGGGTGGAAACTAGGATGGACGTGGGCTAACAATGAAGTGATATGGTCAATGAGTGGTGCCATAGCAACTGATAGAGGGAATTGTTCATCTTACAGCGGCTCTCAGATGCCACATTCATGCAAGAAAGATCCCACCATAGTTGATCTCTCTCTAGATGCCTCACAAAACAGGTCAGAGCATTGTTGCCGTGGTGGCCTCCTCTCTCCCTGGTCTATTGATCCTTTCTATGCATTCTCTTCATTTGAACTTGAAGTGCGCAACGTGGGAGATAACCCACTTGGACAAGCACCTATTAATCTTACATTGATGGCCCCAGGTCCTGGTTACACTTGTAGCCCCCTTCTTGACACTGATCTCTCAGTGTCCTCAGATTTTGGGGGACTAAGACAAGTTCCTGTTCTCAGAACTTGGAAGTCAACATGTGCATACTCCAGTTTCTTAGCAAACACAATACCGGTATGCTGTGTTTCCCTCTCATCATTTTACAACCCCGCCATCACATCTTGCCGTAATTGCAGTTGTGGATGCAGAGAAGCAGATAAAAGTACAGCAACTTGCATAAGGTCTAGTTCCTTGTCACGGTCTAATGAGGACAACACAATTGATGAAATGATTGAATGCACCGACCACATGTGCCCAGTTCGAGTCCATTGGCATTTCAAGAACAATTATATGAACCAATGGAGGGTGAAGCTTACAATTTCTAACTACAACTACAACAGAAACTACTCAAACTGGAACGTACTCGTTCAACATCCTGGTTTCACCCAAAAAGCGAGAACTTACAGCTTCAACAGCACTAAACTTCCCACCCTTGGGCTCCAAGATGGAGTTTCCCTTTTTTGGGGGATAGATTATTACAACAATGAGCTAGTGCATTCTGATAAGGATGGAGTGGGTCTTGTGACTACAGAAATACTATTGGATAAAGATCCAAATTCTTTCACAGTAAGTAATGGATGGGCATTTCCGAGAAGAATATATTTCAACGGGGAGAACTGCGAAATGCCTTTACCTGACACGTTTCCTATGTTACCAAATGGTGGCTCCATTTTAAGAGCTACTTACTGTGGTTTCAGTCTTTTATATATCCTTTTGTTTCTTGCCCTACTACTGATCCTTTGGTTTTGA 1344 0.4293 MGLNVHRVHSPTLKSIILLLALCTLSDCYDPLDPNGNISVTFDIFQRTPDNGYLARVTLQNYYQYRHVDKPGWKLGWTWANNEVIWSMSGAIATDRGNCSSYSGSQMPHSCKKDPTIVDLSLDASQNRSEHCCRGGLLSPWSIDPFYAFSSFELEVRNVGDNPLGQAPINLTLMAPGPGYTCSPLLDTDLSVSSDFGGLRQVPVLRTWKSTCAYSSFLANTIPVCCVSLSSFYNPAITSCRNCSCGCREADKSTATCIRSSSLSRSNEDNTIDEMIECTDHMCPVRVHWHFKNNYMNQWRVKLTISNYNYNRNYSNWNVLVQHPGFTQKARTYSFNSTKLPTLGLQDGVSLFWGIDYYNNELVHSDKDGVGLVTTEILLDKDPNSFTVSNGWAFPRRIYFNGENCEMPLPDTFPMLPNGGSILRATYCGFSLLYILLFLALLLILWF* 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0055 447 PIRSF COBRA 3 446 IPR006918 GO:0010215|GO:0031225
Gso4g0055 447 Pfam COBRA-like protein 53 215 IPR006918 GO:0010215|GO:0031225
Gso4g0055 447 PANTHER PROTEIN COBRA 4 438 IPR006918 GO:0010215|GO:0031225
Gso4g0055 447 PANTHER COBRA-LIKE PROTEIN 4 438 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0055 Gso-Chr4 486353 489314 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0055 15 447 COBRA Gene Family AT3G02210 46.275 3.62e-136 397
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0055 - - vra:106760500 768.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0055 4 486353 489314 Gso4g0055 4 486353 489314 ECH
Gso4g0055 4 486353 489314 Gso6g0050 6 480719 483031 GST