Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0035 ATGGGAAGGTCCCCTTGCTGTGAGAAAGCACACACAAACAAAGGTGCATGGACCAAAGAAGAAGATCATCGCCTCATTTCTTACATTAGAGCTCACGGTGAAGGCTGCTGGCGCTCTCTCCCCAAAGCCGCCGGCCTTCTCCGTTGCGGCAAGAGCTGTCGTCTCCGCTGGATCAACTATCTCCGCCCTGACCTCAAGCGCGGCAATTTCACCCTCGAAGAAGACCAACTCATCATCAAACTCCATAGCCTCCTTGGCAACAAGTGGTCTCTAATTGCTGGAAGATTGCCGGGTAGAACGGACAATGAGATAAAGAATTACTGGAATACTCACATAAGAAGGAAGCTTCTGAGCAGAGGAATTGACCCTGCCACTCACAGGCCTCTCAACGATGACAAGGTATTGGAACGCTGCCCTGACTTGAACCTTGAGCTAACCATTAGTCCTCCCCGTCAACCTCAATCTGATCAGCATCACTTGAAGCCCGTTGGGAGAAACTCAAACCTTTGCTTTGCCTGCAGTTTGGGTTTGCAAAATAGCAAAGATCATTGTAGCTGTGCGCTCAACACTGCCAACGCTGCTTCTGGCCATGATTTCTTGGCCTTGAAAACCAGCGTTTTGGAAATGAAATGA 633 0.4961 MGRSPCCEKAHTNKGAWTKEEDHRLISYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTLEEDQLIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLSRGIDPATHRPLNDDKVLERCPDLNLELTISPPRQPQSDQHHLKPVGRNSNLCFACSLGLQNSKDHCSCALNTANAASGHDFLALKTSVLEMK* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0035 210 CDD SANT 69 112 IPR001005 -
Gso4g0035 210 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 130 - -
Gso4g0035 210 CDD SANT 16 61 IPR001005 -
Gso4g0035 210 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gso4g0035 210 SMART sant 66 114 IPR001005 -
Gso4g0035 210 SMART sant 13 63 IPR001005 -
Gso4g0035 210 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gso4g0035 210 PANTHER TRANSCRIPTION REPRESSOR MYB4 1 130 - -
Gso4g0035 210 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gso4g0035 210 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gso4g0035 210 Gene3D - 14 66 - -
Gso4g0035 210 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Gso4g0035 210 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gso4g0035 210 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
Gso4g0035 210 Gene3D - 69 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0035 Gso-Chr4 354942 355906 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0035 1 210 MYB Transcription Factor Family AT4G34990 56.159 3.43e-94 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso4g0035 Myb_DNA-binding 1.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0035 K09422 - gmx:100306265 446.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0035 4 354942 355906 Gso4g0035 4 354942 355906 ECH
Gso4g0035 4 354942 355906 Gso6g0035 6 360344 361372 GST