Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0027 ATGTCGAAGGAAGTGAGCCAGCAGAGGAAGGACTACGTAGACCCTCCGCCAGCCCCCCTCATCGACTTGGCCGAGATTAAGCTCTGGTCCTTCTACAGAGCCCTCATCGCCGAGTTTATCGCCACACTCCTCTTCCTCTACGTCACCGTCGCCACCGTCATTGGCCACAAAAAACAGACCGGACCATGTGACGGCGTTGGCCTTCTCGGCATCGCATGGGCCTTCGGTGGCATGATCTTTGTCCTCGTCTACTGCACCGCCGGCATTTCTGGTGGACACATCAACCCTGCGGTGACTTTTGGCCTGTTCCTGGCCCGCAAGGTGTCTCTCATTCGTGCCCTGTTCTACATGGTAGCGCAGTGTTTGGGTGCTATCTGCGGTGTCGGGTTGGTGAAGGCCTTCATGAAGCACTCCTACAACTCCCTCGGCGGCGGTGCTAACTCCGTCAGCGCTGGCTACAACAAAGGCAGTGCTCTGGGTGCGGAGATCATCGGCACTTTCGTCCTTGTCTACACCGTTTTCTCGGCTACCGACCCCAAGAGAAGCGCTCGTGACTCTCATATCCCCGTGTTGGCCCCATTGCCCATTGGGTTTGCCGTTTTCATGGTTCACTTGGCCACCATTCCCATCACTGGTACCGGGATTAACCCAGCAAGGAGCTTCGGTGCTGCTGTTATCTACAACAATGGCAAAGTTTGGGATGACCATTGGATATTCTGGGTTGGACCATTCGTGGGAGCGTTGGCGGCGGCGGCGTACCATCAGTACATCCTGAGAGCAGCGGCTATTAAGGCCTTAGGGTCGTTCAGGAGCAACCCTACCAACTAG 828 0.564 MSKEVSQQRKDYVDPPPAPLIDLAEIKLWSFYRALIAEFIATLLFLYVTVATVIGHKKQTGPCDGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRALFYMVAQCLGAICGVGLVKAFMKHSYNSLGGGANSVSAGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHIPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNGKVWDDHWIFWVGPFVGALAAAAYHQYILRAAAIKALGSFRSNPTN* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0027 275 SUPERFAMILY Aquaporin-like 25 259 IPR023271 -
Gso4g0027 275 Gene3D Glycerol uptake facilitator protein. 18 275 IPR023271 -
Gso4g0027 275 TIGRFAM MIP: MIP family channel proteins 37 253 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso4g0027 275 Pfam Major intrinsic protein 26 253 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso4g0027 275 PRINTS Major intrinsic protein family signature 33 52 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso4g0027 275 PRINTS Major intrinsic protein family signature 75 99 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso4g0027 275 PRINTS Major intrinsic protein family signature 112 131 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso4g0027 275 PRINTS Major intrinsic protein family signature 161 179 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso4g0027 275 PRINTS Major intrinsic protein family signature 197 219 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso4g0027 275 PRINTS Major intrinsic protein family signature 237 257 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso4g0027 275 PANTHER AQUAPORIN PIP-TYPE-RELATED 1 275 - -
Gso4g0027 275 CDD MIP 33 257 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso4g0027 275 ProSitePatterns MIP family signature. 93 101 IPR022357 -
Gso4g0027 275 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 275 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0027 Gso-Chr4 273713 275067 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0027 1 275 Major Intrinsic Protein MIP AT4G35100 88.929 0.0 506
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0027 K09872 - gmx:100306103 556.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0027 4 273713 275067 Gso4g0027 4 273713 275067 ECH