Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0021 ATGGCGGTTGGGCAACTTGTTCCTTCGAATTTGTTCCTCAATCATTCTGCTGCTACAACACTCATACCCACTTCCACTCCCCCCAGACACAGACACCTTCTCTGTATTTCTTCTGCCAATCACACAACCGCAACCGATAACGATTCTCCATTCTCAAGTTTCGGAAGAGTGAAGACTCTCCTGGTCCACAGAAGAAGAAAGGACCAAAGCCATAGACGCGCCGTTCAACTTGAAGATGATAATGATGATGATATAGCCCCTAGACCCAGACGTTCTCAGTCTCGGTCACGAGGAGGAGAAAGATGGGATATGATTCCCAATTATACTCCACAAAGCAAATCAGCGACTGACACAAAGTTTTTCAGTCTAAAGTCCTTCAAAGAAATAGGTTGCAGTGAATATATGATTGAATCCCTCCAGAAACTCTTGTTGAGCCGGCCTTCCCATGTACAGGCCATGGCTTTTGCACCTGTTATTAGTGGAAAGACTTGTGTCATAGCTGACCAAAGTGGTTCTGGTAAGACATTAGCTTATCTCGCACCAATCATCCAGCTCCTTAGACTAGAAGAGCTTGAAGGACGTAGTAGTAAATCCTCTTCACAAGCTCCTAGAGTCCTTGTCCTCGCACCCACGGCTGAGTTGGCTTCTCAGGTCTTAGATAATTGCCGCTCCTTGTCTAAATCTGGAGTTCCATTCAAGTCTATGGTTGTCACCGGAGGTTTTCGCCAAAAAACTCAATTGGAAAATTTACAGCAGGGAGTTGATGTCTTAATAGCTACACCTGGCCGTTTCTTGTTCCTCATCCATGAAGGCTTCTTGCAGTTAACAAATCTAAGATGTGCTATCTTGGATGAGGTAGATATACTCTTTGGTGATGAGGACTTCGAAGTGGCTCTTCAATCCTTGATCAATTCTTCACCTGTAGACACACAGTATTTATTTGTGACTGCAACTTTACCAAAAAATGTTTACACCAAATTGGTTGAAGTTTTTCCTGATTGTGAAATGATTATGGGGCCTGGTATGCACCGAATAAGTTCTCGCCTTCAAGAGATTATAGTAGATTGCAGTGGAGAAGATGGACAAGAAAAAACTCCTGATACAGCATTTCTGAACAAGAAAACTGCACTTCTGCAGCTTGTGGAGGAAAATCCTGTCCCAAGAACTATTGTGTTCTGCAACAAAATTGAAACATGCAGAAAAGTTGAAAATTTGTTAAAGCGTTTTGATAGAAAAGGAAATCACGTGCAAGTTCTACCATTCCATGCTGCCATGACACAAGAATCACGGCTTGCTAGTATGGAAGAGTTTACACGTTCTCCATCAAAAGGAGTCTCCCAGTTTATGGTTTGCACCGACAGAGCATCACGGGGAATAGACTTCACAAGAGTGGATCATGTCATACTCTTTGACTTCCCACGTGATCCCAGTGAATATGTACGGCGTGTTGGAAGAACAGCCAGAGGTGCCAAGGGAGTAGGCAAGGCATTTATCTTTGTGGTTGGCAAGCAAGTATCCCTTGCACGCAAAATAATGGAAAGAAATCAGAAGGGTCACCCACTACATGATGTGCCTTCGGCTTATTAG 1587 0.4354 MAVGQLVPSNLFLNHSAATTLIPTSTPPRHRHLLCISSANHTTATDNDSPFSSFGRVKTLLVHRRRKDQSHRRAVQLEDDNDDDIAPRPRRSQSRSRGGERWDMIPNYTPQSKSATDTKFFSLKSFKEIGCSEYMIESLQKLLLSRPSHVQAMAFAPVISGKTCVIADQSGSGKTLAYLAPIIQLLRLEELEGRSSKSSSQAPRVLVLAPTAELASQVLDNCRSLSKSGVPFKSMVVTGGFRQKTQLENLQQGVDVLIATPGRFLFLIHEGFLQLTNLRCAILDEVDILFGDEDFEVALQSLINSSPVDTQYLFVTATLPKNVYTKLVEVFPDCEMIMGPGMHRISSRLQEIIVDCSGEDGQEKTPDTAFLNKKTALLQLVEENPVPRTIVFCNKIETCRKVENLLKRFDRKGNHVQVLPFHAAMTQESRLASMEEFTRSPSKGVSQFMVCTDRASRGIDFTRVDHVILFDFPRDPSEYVRRVGRTARGAKGVGKAFIFVVGKQVSLARKIMERNQKGHPLHDVPSAY* 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0021 528 Pfam DEAD/DEAH box helicase 149 323 IPR011545 GO:0003676|GO:0005524
Gso4g0021 528 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 124 152 IPR014014 GO:0003724
Gso4g0021 528 Gene3D - 345 522 IPR027417 -
Gso4g0021 528 CDD SF2_C_DEAD 349 500 - -
Gso4g0021 528 Gene3D - 89 337 IPR027417 -
Gso4g0021 528 MobiDBLite consensus disorder prediction 65 109 - -
Gso4g0021 528 SMART ultradead3 143 352 IPR014001 -
Gso4g0021 528 Pfam Helicase conserved C-terminal domain 373 489 IPR001650 -
Gso4g0021 528 SMART helicmild6 400 490 IPR001650 -
Gso4g0021 528 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 54 526 - -
Gso4g0021 528 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 54 526 - -
Gso4g0021 528 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 155 337 IPR014001 -
Gso4g0021 528 CDD DEADc 135 323 - -
Gso4g0021 528 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 372 528 IPR001650 -
Gso4g0021 528 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 159 501 IPR027417 -
Gso4g0021 528 MobiDBLite consensus disorder prediction 71 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0021 Gso-Chr4 218757 222646 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0021 123 511 Eukaryotic Initiation Factors Gene Family AT3G19760 26.923 6.47e-32 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0021 K13179 - gmx:100784377 1019.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0021 4 218757 222646 Gso6g0024 6 239955 243394 GST