Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0005 ATGGAATATGGTGGGTTGGTGCAGAATAGTGCATATGGGAGCTTCTCAGAAATTTTTGGCCCAGAAACGGATTTCATAGATGAACTGTTTGTGGAAGGATGCTGGGTGGAAACAAGGGTTGGATCGTACCTGAATTGTGGGGGGGAGGCTAATTCTTCAAAGCCAAACACGATGGCTAGCATGGAGACGTCGGCGCAAATAATATTCCAAGAAGAATCATTATCAGACCCGGAAATTAGTTTGATGGTGGGGAAGAGATGGTGGATTGGACCAAGGGAGAATCCGGGGCCATCTTCCTCTGTGAAAGAGAGATTAGTTATTGCAGTCGGGTACTTGAAAGAATACGCCAAGAATTCCAATTTGCTGATTCAGGTATGGGTACCCGAACGGAGGAGATCTGCACGTGCTCAGCCTCAGGATAACTACCCATACGCCGCGCTTCTTAATACAACATCAGCTTTTCAGTTTCAGGAGGATTGGGTTCATGACCAGTGGACTCCCAACATCCGCTTCTTCAGAAGTCACGAGTACCCGCGCCATCTACGACGTCCTGGATCTCTCGCACTTCCTGTCTTTGAGAGTGGCTCCGCCATGTGTCTCGGTGTTGTCGAGATTCTCATGCCCAACAACCCCGACCTTCACGCCCTTCAGAGTGTTGATTTTACAAGCAGTACTTGTCATCAGAACTTTATTCCACCTGCAGCCGTGACCGCGAAGGGTTTTGACGAGTTGTACCAAAGTGCATTAAATGAGATAGTAGAAGTTTTGACGTGTGTATGCAAGGCGCATAACTTGCCTTTAGCTCTCACATGGGCTCCCTGCATCCAACAAGGAAAGAGTGGATGTGGGCATTCAAACGATGAGAATTATGTGTCGATGGTGGATCCTGCTAGTTTTGTGGCGGATGTAGAGGTACTGGGTTTCCTGGAAGCGTGCTCTGAGTGTCACCTTTTGGGGGGGCAAGGAGTAGTTGGGACAGCTTTCACAACCACCAAACCTTGTTTTGCAAATGACATAACTGCCTTCAGCAAGGCGGAATATCCTCTGGCGCACCATGCTAACATGTTTGGCTTGCATGCTGCGGTGGCCATTCCACTCCTGAGTGACTCCGCTGATTTTGTGTTAGAGTTTTTCCTGCCAAAGGATTGCCATGACACCCAAGAGCAGAAGCAGATGCTCAACTCCTTGTCTATGCTAGTACAACAAGCTTGCAGGAGTTTGCATGTTGTCATGGGAAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAATTAATCGCGTTGCCGCCCGTTGGCAAAGAAATGGAGTCATCATCATCATCATCCTGGATTGCACATATGATGGAGGCCCAACAGAAGGGGAAAGGTGTCTCGGTGTCCTTGGAATACCTCCAAGAGCCAAAACAAGAGTTCAGAGTGACAACCAACTGCAATGAACAGGTTAGTGTTGGTGTTGAGAGTGGGGGAGGAGAAGAATCATATACTGCAGCTTTTGGTGGCCGCCGGGGTGCCAGGAAATCAGCTGGCGACAAGAGACGAACCAAGGCAGAGAAGACTATCAGCTTGCCGGTTCTTCGACAATACTTTGCAGGAAGCCTGAAAGACGCTGCCAAGAGCATTGGCGTATGTCCTACCACTCTTAAAAGGATATGCCGACAACATGGGATCACAAGGTGGCCTTCAAGGAAAATTAAGAAGGTAGGCCACTCCTTAAGAAAACTTCAACTTGTCATCGATTCCGTCCAGGGTGCCGAAGGTGCCATTCAAATTGGCTCCTTCTATACCAGTTTCCCAGAGTTGAGCTCTGCCAATGGTGTTTCTGAATCATCCAACATCAATAATAAGTTTTTTTCTGAATATAACCAAGGAGCTACTACTTTCAAATCCCCAACTTCGCCTTGCAGTCAGACCACTATTCTGATTTCAGAGAACCAACAACCACTTGTACTTGGTGCATCAATCCAGGTCCAAGAGGAAGCAAAACATTTCGCCCACCATCTTGAGCCTCTACCACCAGCTCCCTTGCCCCAATCTAGTACTAGTCTCTGGAACACGGCCGGCACTTTTAGAGTCAAAGCTACTTTTGGGGATGAAAAAATCCGCTTTAGCTTGCAACCAAACTGGGGATTCAGAGATTTGCAGATGGAGATTGCTAGACGTTTCAATCTAAACGAGATTAGCAACATTCAGCTCAAGTATTTGGATGATGCTCGAGAGTGGGTTCTTTTAACATGCGATGCTGATCTTGACGAGTGTAAAGACATAAATACATCATCTCAGAGCCGTACAATTAGACTCTTCCTCTTTCAAGCTTCGCCTCTAAATCATGCAAATGCATTTCGAGGCACCAGCCCCTCCTAG 2358 0.4763 MEYGGLVQNSAYGSFSEIFGPETDFIDELFVEGCWVETRVGSYLNCGGEANSSKPNTMASMETSAQIIFQEESLSDPEISLMVGKRWWIGPRENPGPSSSVKERLVIAVGYLKEYAKNSNLLIQVWVPERRRSARAQPQDNYPYAALLNTTSAFQFQEDWVHDQWTPNIRFFRSHEYPRHLRRPGSLALPVFESGSAMCLGVVEILMPNNPDLHALQSVDFTSSTCHQNFIPPAAVTAKGFDELYQSALNEIVEVLTCVCKAHNLPLALTWAPCIQQGKSGCGHSNDENYVSMVDPASFVADVEVLGFLEACSECHLLGGQGVVGTAFTTTKPCFANDITAFSKAEYPLAHHANMFGLHAAVAIPLLSDSADFVLEFFLPKDCHDTQEQKQMLNSLSMLVQQACRSLHVVMGKEEEEEEEEEELIALPPVGKEMESSSSSSWIAHMMEAQQKGKGVSVSLEYLQEPKQEFRVTTNCNEQVSVGVESGGGEESYTAAFGGRRGARKSAGDKRRTKAEKTISLPVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKVGHSLRKLQLVIDSVQGAEGAIQIGSFYTSFPELSSANGVSESSNINNKFFSEYNQGATTFKSPTSPCSQTTILISENQQPLVLGASIQVQEEAKHFAHHLEPLPPAPLPQSSTSLWNTAGTFRVKATFGDEKIRFSLQPNWGFRDLQMEIARRFNLNEISNIQLKYLDDAREWVLLTCDADLDECKDINTSSQSRTIRLFLFQASPLNHANAFRGTSPS* 786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0005 785 Pfam RWP-RK domain 519 566 IPR003035 -
Gso4g0005 785 PANTHER PROTEIN NLP2 26 780 - -
Gso4g0005 785 Pfam PB1 domain 687 769 IPR000270 GO:0005515
Gso4g0005 785 SMART PB1_new 687 770 IPR000270 GO:0005515
Gso4g0005 785 PANTHER PROTEIN NLP8 26 780 IPR045012 GO:0003700
Gso4g0005 785 CDD PB1_NLP 688 769 IPR034891 -
Gso4g0005 785 ProSiteProfiles RWP-RK domain profile. 505 586 IPR003035 -
Gso4g0005 785 ProSiteProfiles PB1 domain profile. 687 770 IPR000270 GO:0005515
Gso4g0005 785 MobiDBLite consensus disorder prediction 493 514 - -
Gso4g0005 785 Gene3D - 688 770 - -
Gso4g0005 785 SUPERFAMILY CAD & PB1 domains 677 772 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0005 Gso-Chr4 74419 77875 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0005 6 779 NLP Transcription Factor Family AT4G35270 41.728 0.0 609
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Gso4g0005 PB1 3.3e-16 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0005 - - gmx:100787220 1538.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0005 4 74419 77875 Gso4g0005 4 74419 77875 ECH
Gso4g0005 4 74419 77875 Gso6g0004 6 56426 59621 GST