Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g2246 ATGTGTGGAGGAGCTATCATCTCTGATTTCATTCCGGCGGCGGCGATCGCCGGGTCTCGCCGCCTGACCGCCGATTACCTGTGGCCGGATTTGAAGAAGCGGAAGTCTGACTTGGACGTTGACTTCGAGGCTGATTTCAGGGATTTTAAAGACGATTCTGATATCGACGACGACGACGACGATCACCAAGTCAAGCCCTTTGCTTTCGCCGCCTCTTCTCGTCTGTCTACGGCAGCGAAATCTGTGGCATTCCAAGGTCGGGCTGAGATATCTGCAAATAGAAAGAGGAAGAATCAGTATAGGGGAATCCGTCAACGCCCTTGGGGAAAATGGGCAGCTGAGATTCGGGATCCAAGAAAGGGGGTTCGTGTCTGGCTTGGAACCTTCAACACTGCTGAAGAAGCTGCAAGAGCTTATGATGCTGAAGCACGGAGGATTCGTGGCAAGAAAGCCAAGGTGAATTTTCCTGAGGCACCAGGTACTTCTTCTGTAAAACGTTCCAAGGTAAATCCACAGGAAAATCTTAAGACTGTTCAGCCCAATCTGGGTCACAAGTTCAGTGCTGGCAACAATCACATGGATCTGGTGGAACAGAAACCCCTAGTTAGCCAGTATGCTAACATGGCTTCCTTCCCTGGCAGTGGAAATGGGCTAAGATCCCTTCCTTCGTCTGATGATGCAACCCTTTACTTCAGTTCAGATCAAGGGAGTAATTCATTTGATTATGCTCCTGAGATCTCATCCATGCTTTCTGCTCCTTTGGATTGTGAATCTCATTTTGTGCAAAATGCCAACAAGCAGCAGCCTAACTCTCAGAATGTGGTATCTATTGAAGATGATTCTGCAAAGACACTCTCTGAGGAGCTTGTGGATATTGAATCTGAGTTGAAGTTCTTTCAGATGCCTTATCTTGAAGGGAGCTGGGGCGATACTTCATTGGAATCCTTGCTATCTGGTGACACAACTCAGGATGGTGGAAACCTCATGAACCTTTGGTGCTTTGATGACATTCCTTCCATGGCTGGTGGAGTTTTCTGA 1038 0.4798 MCGGAIISDFIPAAAIAGSRRLTADYLWPDLKKRKSDLDVDFEADFRDFKDDSDIDDDDDDHQVKPFAFAASSRLSTAAKSVAFQGRAEISANRKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDAEARRIRGKKAKVNFPEAPGTSSVKRSKVNPQENLKTVQPNLGHKFSAGNNHMDLVEQKPLVSQYANMASFPGSGNGLRSLPSSDDATLYFSSDQGSNSFDYAPEISSMLSAPLDCESHFVQNANKQQPNSQNVVSIEDDSAKTLSEELVDIESELKFFQMPYLEGSWGDTSLESLLSGDTTQDGGNLMNLWCFDDIPSMAGGVF* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g2246 345 Gene3D AP2/ERF domain 98 157 IPR036955 GO:0003700|GO:0006355
Gso3g2246 345 PANTHER EREBP TRANSCRIPTION FACTOR 1 338 - -
Gso3g2246 345 SMART rav1_2 99 162 IPR001471 GO:0003700|GO:0006355
Gso3g2246 345 Pfam AP2 domain 99 148 IPR001471 GO:0003700|GO:0006355
Gso3g2246 345 PANTHER DNA-BINDING DOMAIN 1 338 IPR044808 GO:0003700|GO:0009873
Gso3g2246 345 CDD AP2 99 158 IPR001471 GO:0003700|GO:0006355
Gso3g2246 345 PRINTS Ethylene responsive element binding protein signature 100 111 IPR001471 GO:0003700|GO:0006355
Gso3g2246 345 PRINTS Ethylene responsive element binding protein signature 122 138 IPR001471 GO:0003700|GO:0006355
Gso3g2246 345 ProSiteProfiles AP2/ERF domain profile. 99 156 IPR001471 GO:0003700|GO:0006355
Gso3g2246 345 SUPERFAMILY DNA-binding domain 99 156 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g2246 Gso-Chr3 47600541 47602715 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g2246 1 345 AP2-EREBP Transcription Factor Family AT1G53910 46.770 6.53e-63 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso3g2246 AP2 1.7e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g2246 K09286 - gmx:100170723 657.907