Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g2238 ATGGTGGAGTTTCAAAGGTTTTTGCTGTTGCTGTGCATCACCACCTGCATTCTTTGTTGGATACCCAATAGTGCCACTGCCGCCACAGATCCAAACGATGTGTTTAATGCAGCTGCTGCTGTGAGATTTTTGTTTCAAAATATGAACTCACCACCCCAGCTAGGTTGGCCTCCTAATGGTGATGATCCATGTGGACAATCTTGGAAAGGCATCACTTGCTCAGGCAACCGTGTTACAGAGATTAAGCTATCTAATCTTGGACTAACTGGATCGGTTCCTTACGGATTACAAGTCTTGACATCTTTGAATGACCTAGACATGAGTAGCAACCGTCTTGGTGGAAGCATACCTTACCAACTTCCTCCATATTTGCAGCGCTTAAATCTTGCTTATAATAACATCACAGGGACAGTCCCTTACTCTATTTCTAACTTGACCGCTCTTACAGACCTGAATCTTGGTCACAATCAGCTCCAGCAAGGACTGGGTGTCGACTTTCATAATCTTTCTACTCTCTCCACATTGGATCTCTCCTTCAATTCTCTAACAGGTGACCTCCCTCAGACTATGAGCTCACTTTCACGCATAACCACCATGTATCTGCAAAATAACCAGTTTACAGGCACTATTGATGTCCTTGCTAATCTGCCTCTGGATAATCTGAATGTGGAAAACAATAATTTTACTGGATGGATACCGGAACAGTTGAAGAACATAAACCTACAGACCGGTGGTAATGCATGGAGCTCAGGTCCTGCACCCCCACCTCCTCCAGGGACGCCTCCAGCACCTAAAAGCAACCAGCACCACAAGTCTGGTGGTGGAAGTACCACCCCCTCAGATACTGGCAGTGGCAGCAGCTCAATTGAAGAGGGCAAAAAATCTGGTATCGGAGGTGGTGCCATAGCTGGAATTGTGATCTCGGTCATAGTTTTGGGGGCAATAGTAGCATTCTTTCTGGTGAAGAGAAAATCCAAGAAGTCATCTTCTGATTTAGAAAAGCAGGATAATCAGTCCTTTGCTCCACTTCCTTCAAATGAAGTGCATGAAGAAAAGTCCATGCAAACTTCCTCTGTAACAGACTGGAAGACGTTTGATACTTCTGGCTCAATAAATCTTAAACCCCCACCTATTGATCATCATAAATCATTTGATGAGGAAGAATTCTCCAAGAAGCCCACAATTGTGAAGAAGACTGTAACAGCTCCTGCAAATGTGAAATCATATTCTATTGCTGAACTGCAGATTGCTACTGGCAGCTTCAGTGTGGATCACCTTGTTGGTGAGGGGTCTTTTGGGCGTGTATACCATGCTCAATTTGATGGACAGGTTCTTGCTGTGAAGAAGATAGATTCATCTGTCCTTCCCAATGATTTGACAGATGATTTTATAGAAATAATTTCAAACATCTCCAATTTACATCATCCAAATGTGACAGAGCTTGTAGGTTATTGCTCAGAGTATGGACAACACCTCTTGGTCTATGAGTTTCATAAAAACGGATCACTGCATGACTTCCTTCACCTACCAGATGAATATAGTAAACCATTGATATGGAATTCGCGTGTCAAGATTGCTTTGGGGACTGCACGTGCTCTAGAGTACCTACATGAAGTTAGTTCGCCATCAGTTGTTCATAAGAATATTAAGTCAGCCAACATATTACTGGATACAGAGCTTAATCCTCATCTTTCAGATAGTGGATTGGCAAGTTATATTCCAAATGCGGACCAGATATTGAACCATAATGTTGGATCTGGATATGATGCACCTGAAGTTGCCTTGTCTGGTCAGTATACTTTGAAAAGTGATGTCTACAGCTTTGGAGTTGTCATGTTGGAACTTCTCAGCGGACGGAAACCATTTGATAGCTCAAGGCCAAGATCTGAGCAGTCTTTGGTTCGATGGGCAACACCTCAACTCCATGATATTGATGCATTGGCTAAAATGGTTGATCCTGCAATGAAAGGGCTATATCCTGTTAAGTCTCTTTCTCGATTTGCCGATGTTATTGCTCTTTGCGTTCAGCCGGAGCCAGAATTCCGACCACCAATGTCAGAAGTGGTTCAAGCACTGGTGCGATTAGTGCAGCGAGCTAACATGAGCAAGCGAACATTTAGTAGTAGTGATCATGGAGGATCCCAACGAGGGAGTGATGAGCCAGTTCTACGAGACATCTAA 2181 0.4347 MVEFQRFLLLLCITTCILCWIPNSATAATDPNDVFNAAAAVRFLFQNMNSPPQLGWPPNGDDPCGQSWKGITCSGNRVTEIKLSNLGLTGSVPYGLQVLTSLNDLDMSSNRLGGSIPYQLPPYLQRLNLAYNNITGTVPYSISNLTALTDLNLGHNQLQQGLGVDFHNLSTLSTLDLSFNSLTGDLPQTMSSLSRITTMYLQNNQFTGTIDVLANLPLDNLNVENNNFTGWIPEQLKNINLQTGGNAWSSGPAPPPPPGTPPAPKSNQHHKSGGGSTTPSDTGSGSSSIEEGKKSGIGGGAIAGIVISVIVLGAIVAFFLVKRKSKKSSSDLEKQDNQSFAPLPSNEVHEEKSMQTSSVTDWKTFDTSGSINLKPPPIDHHKSFDEEEFSKKPTIVKKTVTAPANVKSYSIAELQIATGSFSVDHLVGEGSFGRVYHAQFDGQVLAVKKIDSSVLPNDLTDDFIEIISNISNLHHPNVTELVGYCSEYGQHLLVYEFHKNGSLHDFLHLPDEYSKPLIWNSRVKIALGTARALEYLHEVSSPSVVHKNIKSANILLDTELNPHLSDSGLASYIPNADQILNHNVGSGYDAPEVALSGQYTLKSDVYSFGVVMLELLSGRKPFDSSRPRSEQSLVRWATPQLHDIDALAKMVDPAMKGLYPVKSLSRFADVIALCVQPEPEFRPPMSEVVQALVRLVQRANMSKRTFSSSDHGGSQRGSDEPVLRDI* 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g2238 726 MobiDBLite consensus disorder prediction 265 291 - -
Gso3g2238 726 MobiDBLite consensus disorder prediction 250 264 - -
Gso3g2238 726 Gene3D Ribonuclease Inhibitor 38 254 IPR032675 -
Gso3g2238 726 ProSitePatterns Protein kinases ATP-binding region signature. 427 449 IPR017441 GO:0005524
Gso3g2238 726 MobiDBLite consensus disorder prediction 703 726 - -
Gso3g2238 726 MobiDBLite consensus disorder prediction 334 360 - -
Gso3g2238 726 Gene3D Phosphorylase Kinase; domain 1 382 497 - -
Gso3g2238 726 MobiDBLite consensus disorder prediction 242 292 - -
Gso3g2238 726 Gene3D Transferase(Phosphotransferase) domain 1 499 714 - -
Gso3g2238 726 SUPERFAMILY Protein kinase-like (PK-like) 403 692 IPR011009 -
Gso3g2238 726 SUPERFAMILY L domain-like 46 238 - -
Gso3g2238 726 Pfam Leucine rich repeat 122 158 IPR001611 GO:0005515
Gso3g2238 726 PANTHER STRUBBELIG-RECEPTOR FAMILY 6 PROTEIN 29 720 - -
Gso3g2238 726 Pfam Protein tyrosine and serine/threonine kinase 424 692 IPR001245 GO:0004672|GO:0006468
Gso3g2238 726 ProSiteProfiles Protein kinase domain profile. 421 695 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso3g2238 726 MobiDBLite consensus disorder prediction 327 360 - -
Gso3g2238 726 PANTHER OS01G0253100 PROTEIN 29 720 IPR045271 GO:0004714|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g2238 Gso-Chr3 47545082 47553273 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g2238 5 705 Strubbelig Receptor Gene Family AT1G53730 65.444 0.0 836
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Gso3g2238 PK_Tyr_Ser-Thr 5.9e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g2238 - - gmx:100807707 1286.55