Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g2235 ATGGCATTAGCATACTTGTCTTTTTTATATGTTAGTTGTCAACATCACGCCACTCTCTTGCTTCTTACCTTGGCTTTCCCTTTCCTGCGACATGGTCAATCAATGGTCGCTGCTATATGCTATATGCTATATGCTTTGCAATCCCCAACATCTCAAACCCATATGCTAACATTGAGGAAGTATCCTAAAGACTCCCTTTTTCCCTTCTGGGGATTCGTTCTAATGACACAGGGAACTCGACCCTTTTCCATCTTCATGGTTTCCAAGTTAATGGTCTTTGTCTTAATACTGTTCCTTCTGTCTGGATTCCTTGTTCTTGTTCAAGCCTCCTCGTGTAACCAACTGGATAGAGACTCGCTCCTCTCCTTCTCCAGGAATATATCCTCTCCGTCCCCTCTCAATTGGTCTGCTTCTTCTGTTGATTGCTGTTCTTGGGAAGGCATTGTGTGTGATGAGGATCTCAGAGTCATACATCTATTGCTACCATCCAGGGCTCTCTCTGGCTTCCTCTCCCCATCCCTCACAAACCTCACTGCTCTCTCCCGCCTTAATCTCTCCCATAATCGCTTATCTGGTAATCTTCCCAACCATTTTTTCTCACTTCTTAATCACCTGCAGATTCTTGATTTGAGCTTCAATCTTTTCTCTGGCGAATTGCCACCCTTTGTTGCTAATATCAGTGTCAATACTATCCAGGAGCTGGATATGTCTAGTAATTTATTCCACGGAACACTCCCACCTTCTCTCCTTCAGCACCTGGCAGATGCCGGTGCTGGAGGGAGTTTGACTTCTTTTAATGTTAGTAACAATAGCTTCACAGGTCATATTCCCACTTCTCTCTGCAGTAACCACAGTAGCTCGTCTTCTCTCAGATTCTTGGATTATTCCTCCAATGATTTCATAGGCACGATTCAGCCTGGACTAGGAGCATGTTCCAATCTGGAGAGATTTCGAGCAGGTTCCAATTCACTATCTGGGCCCCTTCCTGGTGATATTTTTAATGCTGTTGCTCTCACAGAAATCTCCTTGCCCCTCAATAAACTCAATGGAACCATTGGTGAGGGCATTGTTAACCTTGCCAACCTCACAGTTTTGGAGCTCTACTCCAATAATTTCACCGGGCCCATTCCCTCGGATATTGGTAAGCTCTCCAAATTGGAACGTTTACTCCTTCATGCCAACAATATAACTGGTACTTTGCCCACATCTCTGATGGACTGTGCCAATCTTGTCATGTTGGATGTAAGGCTTAACTTGTTGGAGGGAGACCTCTCAGCATTAAATTTCTCCGGACTCCTCAGACTCACAGCACTTGACCTTGGCAACAATAGTTTCACTGGTATTTTACCACCAACCCTTTATGCTTGTAAGTCACTTAAAGCAGTAAGGCTAGCATCTAATCATTTTGAGGGACAGATCTCACCTGACATACTTGGACTTCAGTCTCTGGCTTTCCTTTCAATTTCTACCAACCACCTGAGTAATGTCACTGGGGCTCTGAAGTTACTCATGGAACTCAAGAACCTCAGTACCCTTATGCTCTCCCAGAATTTTTTCAATGAAATGATGCCAGATGATGCAAACATAACAAATCCAGATGGATTCCAAAAGATCCAAGTTCTAGCATTGGGTGGTTGTAATTTCACAGGCCAAATACCACGCTGGCTTGTTAATCTGAAGAAGCTTGAGGTCTTGGATTTGTCTTATAATCAAATTAGTGGTTCAATTCCTCCTTGGTTGAACACACTTCCTGAGCTTTTCTACATAGACTTGTCTTTTAACCGCCTCACAGGAATATTTCCAACTGAGCTCACAAGGCTTCCAGCACTAACATCACAACAGGCATATGATGAAGTAGAAAGGACTTACCTGGAGTTACCCCTCTTTGCTAATGCCAACAATGTTTCCCAAATGCAATATAATCAGATTTCCAACCTACCACCAGCAATATATCTGGGAAACAATAGCCTCAATGGCAGTATCCCTATAGAGATTGGCAAACTGAAAGTCCTTCATCAGCTGGACCTTAGTAACAACAAATTCTCTGGCAATATCCCAGCAGAAATTTCTAACTTGATTAACTTAGAGAAACTATACCTCTCAGGAAACCAACTTTCTGGTGAGATTCCTGTTTCACTCAAAAGCTTGCATTTTTTGTCTGCTTTCAGTGTAGCATACAATAATCTTCAAGGACCGATACCAACTGGTGGTCAATTTGATACTTTCTCCTCTTCCAGCTTTGAAGGAAACCTACAGTTGTGTGGTTCAGTTGTTCAGCGTTCTTGTCTTCCTCAACAGGGTACTACTGCACGTGGTCACAGATCAAACAAAAAATTGATAATTGGATTTTCCATTGCAGCCTGTTTTGGCACTGTTTCCTTCATTTCAGTGTTGATAGTGTGGATAATATCCAAGAGAAGGATCAATCCAGGTGGAGACACTGACAAGGTTGAACTGGAGTCTATTTCTGTCAGCTCTTACAGTGGAGTTCATCCTGAGGTTGACAAAGAGGCTAGCCTAGTGGTATTGTTCCCAAATAAAACAAATGAAATCAAGGACCTTACCATATTTGAAATATTAAAGGCCACTGAAAATTTCAGTCAGGCAAACATAATAGGATGTGGGGGTTTTGGTTTGGTTTATAAAGCAACGTTACCAAATGGAACTACAGTGGCCATCAAGAAACTTTCAGGAGATTTGGGTCTTATGGAAAGGGAATTTAAAGCAGAGGTGGAGGCTTTGTCCACAGCACAGCATGAAAATCTGGTTGCATTGCAAGGCTATTGTGTGCATGAGGGTGTTCGGCTTCTCATATATACTTACATGGAAAATGGAAGTCTGGATTACTGGTTGCATGAAAAGGCTGATGGTCCATCTCAACTTGATTGGCCTACTCGACTGAAGATTGCACAAGGTGCAAGTTGTGGATTGGCTTACATGCATCAGATATGTGAACCACATATAGTGCATCGTGATATAAAGTCAAGTAATATACTCCTTGATGAAAAGTTTGAAGCACATGTTGCAGATTTTGGGCTGGCCAGATTGATTCTTCCTTATCAAACTCATGTTACAACTGAACTTGTAGGTACATTAGGTTACATACCCCCAGAGTATGGACAAGCATGGGTAGCAACTCTGAGAGGAGATGTCTACAGCTTTGGGGTTGTCATGCTTGAGCTGCTCAGTGGGAGGAGGCCCGTCGATGTAAGCAAGCCTAAAATGTCAAGGGAGTTGGTTGCCTGGGTTCAACAAATGAGGAGTGAAGGAAAACAAGATCAAGTCTTTGATCCTCTTCTGAGAGGGAAGGGCTTCGAAGAAGAGATGCAGCAGGTTCTTGATGCAGCATGCATGTGTGTCAACCAGAATCCTTTCAAGAGACCAAGCATCAGAGAAGTTGTTGAATGGCTGAAGAATGTGGGGTCATCCAAACCGCAAATGAATAAAGACTAG 3453 0.4286 MALAYLSFLYVSCQHHATLLLLTLAFPFLRHGQSMVAAICYMLYALQSPTSQTHMLTLRKYPKDSLFPFWGFVLMTQGTRPFSIFMVSKLMVFVLILFLLSGFLVLVQASSCNQLDRDSLLSFSRNISSPSPLNWSASSVDCCSWEGIVCDEDLRVIHLLLPSRALSGFLSPSLTNLTALSRLNLSHNRLSGNLPNHFFSLLNHLQILDLSFNLFSGELPPFVANISVNTIQELDMSSNLFHGTLPPSLLQHLADAGAGGSLTSFNVSNNSFTGHIPTSLCSNHSSSSSLRFLDYSSNDFIGTIQPGLGACSNLERFRAGSNSLSGPLPGDIFNAVALTEISLPLNKLNGTIGEGIVNLANLTVLELYSNNFTGPIPSDIGKLSKLERLLLHANNITGTLPTSLMDCANLVMLDVRLNLLEGDLSALNFSGLLRLTALDLGNNSFTGILPPTLYACKSLKAVRLASNHFEGQISPDILGLQSLAFLSISTNHLSNVTGALKLLMELKNLSTLMLSQNFFNEMMPDDANITNPDGFQKIQVLALGGCNFTGQIPRWLVNLKKLEVLDLSYNQISGSIPPWLNTLPELFYIDLSFNRLTGIFPTELTRLPALTSQQAYDEVERTYLELPLFANANNVSQMQYNQISNLPPAIYLGNNSLNGSIPIEIGKLKVLHQLDLSNNKFSGNIPAEISNLINLEKLYLSGNQLSGEIPVSLKSLHFLSAFSVAYNNLQGPIPTGGQFDTFSSSSFEGNLQLCGSVVQRSCLPQQGTTARGHRSNKKLIIGFSIAACFGTVSFISVLIVWIISKRRINPGGDTDKVELESISVSSYSGVHPEVDKEASLVVLFPNKTNEIKDLTIFEILKATENFSQANIIGCGGFGLVYKATLPNGTTVAIKKLSGDLGLMEREFKAEVEALSTAQHENLVALQGYCVHEGVRLLIYTYMENGSLDYWLHEKADGPSQLDWPTRLKIAQGASCGLAYMHQICEPHIVHRDIKSSNILLDEKFEAHVADFGLARLILPYQTHVTTELVGTLGYIPPEYGQAWVATLRGDVYSFGVVMLELLSGRRPVDVSKPKMSRELVAWVQQMRSEGKQDQVFDPLLRGKGFEEEMQQVLDAACMCVNQNPFKRPSIREVVEWLKNVGSSKPQMNKD* 1151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g2235 1150 SMART LRR_typ_2 559 583 IPR003591 -
Gso3g2235 1150 SMART LRR_typ_2 480 502 IPR003591 -
Gso3g2235 1150 SMART LRR_typ_2 432 456 IPR003591 -
Gso3g2235 1150 SMART LRR_typ_2 177 201 IPR003591 -
Gso3g2235 1150 SMART LRR_typ_2 668 691 IPR003591 -
Gso3g2235 1150 SMART LRR_typ_2 692 716 IPR003591 -
Gso3g2235 1150 SMART LRR_typ_2 506 528 IPR003591 -
Gso3g2235 1150 SMART LRR_typ_2 383 407 IPR003591 -
Gso3g2235 1150 SMART LRR_typ_2 202 225 IPR003591 -
Gso3g2235 1150 Gene3D Ribonuclease Inhibitor 284 497 IPR032675 -
Gso3g2235 1150 Gene3D Phosphorylase Kinase; domain 1 830 941 - -
Gso3g2235 1150 Gene3D Ribonuclease Inhibitor 498 769 IPR032675 -
Gso3g2235 1150 ProSiteProfiles Protein kinase domain profile. 866 1137 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso3g2235 1150 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 93 1138 - -
Gso3g2235 1150 ProSitePatterns Protein kinases ATP-binding region signature. 872 895 IPR017441 GO:0005524
Gso3g2235 1150 PANTHER OS02G0155400 PROTEIN 93 1138 - -
Gso3g2235 1150 SUPERFAMILY L domain-like 286 612 - -
Gso3g2235 1150 Pfam Leucine rich repeat 537 596 IPR001611 GO:0005515
Gso3g2235 1150 SUPERFAMILY L domain-like 537 753 - -
Gso3g2235 1150 Pfam Protein kinase domain 867 1135 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso3g2235 1150 ProSiteProfiles Leucine-rich repeat profile. 561 584 IPR001611 GO:0005515
Gso3g2235 1150 Pfam Leucine rich repeat N-terminal domain 116 151 IPR013210 -
Gso3g2235 1150 PRINTS Leucine-rich repeat signature 180 193 - -
Gso3g2235 1150 PRINTS Leucine-rich repeat signature 559 572 - -
Gso3g2235 1150 Gene3D Ribonuclease Inhibitor 115 230 IPR032675 -
Gso3g2235 1150 Gene3D Ribonuclease Inhibitor 231 283 IPR032675 -
Gso3g2235 1150 SMART serkin_6 866 1137 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso3g2235 1150 Gene3D Transferase(Phosphotransferase) domain 1 942 1150 - -
Gso3g2235 1150 Pfam Leucine Rich Repeat 434 454 IPR001611 GO:0005515
Gso3g2235 1150 Pfam Leucine Rich Repeat 694 716 IPR001611 GO:0005515
Gso3g2235 1150 SUPERFAMILY Protein kinase-like (PK-like) 850 1137 IPR011009 -
Gso3g2235 1150 ProSitePatterns Serine/Threonine protein kinases active-site signature. 988 1000 IPR008271 GO:0004672|GO:0006468
Gso3g2235 1150 SUPERFAMILY L domain-like 111 332 - -
Gso3g2235 1150 ProSiteProfiles Leucine-rich repeat profile. 694 716 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g2235 Gso-Chr3 47518015 47521848 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g2235 74 800 Miscellaneous Gene Families AT1G17240 49.796 0.0 642
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Gso3g2235 Pkinase 1.4e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g2235 - - gmx:100782574 2227.21