Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g2233 ATGGAGTTGATGCAACAAGTTAAAGGTAATTATTCTGATAGCAGGGAGGAAGAGGAGGAAGAGGAAGCTGCAGCCATCACAAGGGAATCAGAAAGCAGCAGGTTACACCAACAAGATACAGCATCCAATTTTGGAAAGAAGCTAGACTTGATGGACTTGTCACTAGGGAGCAGCAAGGAAGAGGAAGAGGAAGGGAATTTGCAACAAGGAGGAGGAGGAGTGGTTCATCATGCTCACCAAGTAGTGGAGAAAGAACACATGTTTGAGAAAGTGGCGACACCGAGCGACGTAGGGAAGCTGAACAGGCTGGTGATACCGAAGCAGCACGCGGAGAAGTACTTCCCCCTTGACTCCTCAACCAACGAGAAGGGTCTGCTCCTGAATTTCGAGGACAGGAATGGGAAGGTGTGGCGATTCAGGTATTCCTATTGGAACAGCAGCCAGAGCTATGTGATGACAAAAGGGTGGAGCCGCTTTGTTAAGGAGAAGAAGCTGGATGCCGGTGACATTGTCTCCTTCCAGCGTGGCCTTGGGGATTTGTATAGACATCGGTTGTATATAGATTGGAAGAGAAGGCCCGATCATGCTCATGCTCATCCACCTCATCATCACGATCCTTTGTTTCTTCCCTCTATCAGATTGTACTCTCTCCCTCCCACCATGCCACCTCGCTACCACCACGATCATCACTTTCACCACCATCTCAATTACAACAACCTCTTCACTTTTCAGCAACACCAGTACCAGCAGCTTGGTGCTGCCACTACCACTCATCACAACAACTATGGTTACCAGAATTCGGGATCTGGTTCACTCTATTACCTAAGGTCCTCTATGTCAATGGGTGGTGGTGATCAAAACTTGCAAGGGAGAGGGAGCAACATTGTCCCCATGATCATTGATTCTGTGCCGGTTAACGTTGCTCATCACAACAACAATCGCCATGGGAATGGGGGCATCACGAGTGGTGGTACTAATTGTAGTGGAAAACGACTAAGGCTATTTGGGGTGAACATGGAATGCGCTTCTTCGGCAGAAGATTCCAAAGAATTGTCCTCGGGTTCGGCAGCACACGTGACGACAGCTGCTTCTTCTTCTTCTCTTCATCATCAGCGCTTGAGGGTGCCAGTGCCAGTGCCACTTGAAGATCCACTTTCGTCGTCAGCAGCAGCAGCAGCAAGGTTTGGGGATCACAAAGGGGCCAGTACTGGGACTTCGCTGCTGTTTGATTTGGATCCCTCTTTGCAGTATCATCGCCACTGA 1263 0.4925 MELMQQVKGNYSDSREEEEEEEAAAITRESESSRLHQQDTASNFGKKLDLMDLSLGSSKEEEEEGNLQQGGGGVVHHAHQVVEKEHMFEKVATPSDVGKLNRLVIPKQHAEKYFPLDSSTNEKGLLLNFEDRNGKVWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGLGDLYRHRLYIDWKRRPDHAHAHPPHHHDPLFLPSIRLYSLPPTMPPRYHHDHHFHHHLNYNNLFTFQQHQYQQLGAATTTHHNNYGYQNSGSGSLYYLRSSMSMGGGDQNLQGRGSNIVPMIIDSVPVNVAHHNNNRHGNGGITSGGTNCSGKRLRLFGVNMECASSAEDSKELSSGSAAHVTTAASSSSLHHQRLRVPVPVPLEDPLSSSAAAAARFGDHKGASTGTSLLFDLDPSLQYHRH* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g2233 420 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR NGA2 20 365 - -
Gso3g2233 420 SMART B3_2 88 193 IPR003340 GO:0003677
Gso3g2233 420 MobiDBLite consensus disorder prediction 1 47 - -
Gso3g2233 420 Gene3D - 81 205 IPR015300 -
Gso3g2233 420 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 20 365 IPR044800 GO:0003700
Gso3g2233 420 MobiDBLite consensus disorder prediction 348 371 - -
Gso3g2233 420 CDD B3_DNA 86 175 IPR003340 GO:0003677
Gso3g2233 420 Pfam B3 DNA binding domain 88 192 IPR003340 GO:0003677
Gso3g2233 420 ProSiteProfiles B3 DNA-binding domain profile. 88 193 IPR003340 GO:0003677
Gso3g2233 420 SUPERFAMILY DNA-binding pseudobarrel domain 85 191 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g2233 Gso-Chr3 47489971 47492625 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g2233 50 345 RAV Transcription Factor Family AT2G46870 50.333 3.11e-81 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gso3g2233 B3 1.4e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g2233 - - gmx:100781489 735.332