Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g2231 ATGTACCCCATTCCTCAGACCAATCGTCTCCTCCTTCTCCAATTTCTATGCCTTCTTCACACTACCCACTATCACCTCCCTGATTTCGCCACGTTACTCTTGAGCTCTTGTACCTTCTCATCACTACTTTCCATTCCCTTTTGGGCTATTTATTACTACTACACTGTCTTCCCTCCCTCTTCTTCCTCACAAAACCAACATATATTGTACACTACAATGTCACCTATTGTCCTCCTCACTTTTCTTGTGCTTCTTCTGTGCTTCCCATTTTCTTGTTACTCTTGCAATGAAACATGCGGGGACCTCCATGTTCCCTTTCCATTCTATGTCAACACTTCATGTGAGTCAATTTCCAGTGCCTTCCATCTCTCGTGCTCAAATTCCTCTGCCCTTTTACTCAGAATTGGGTCAGTGAGCTACACAGTGTTGGAATTCTTCCCAGATGGTGTGCTGGTTGACTTTCCAGGCTCATCATCCTGTAGACTGTACAATGACTTGAACTCTTTTGGCAGAAACTTTGCAGGGAATAATAAGGACATGTTTGGAGTGTCGGTTGACAATGTTATTGGGCTCTATGACTGTGAGGATTCTTCTCTGTGCAAAGCAGATTGTGAAACCATTGACATGCCTGGCTGTGATGGAAAGGGTGGAGGCTCCCTTGCCTGCTGCTATCCACTCTCTGACCATACCATATGGCATGCTGGAGATGGCTTTTCGGTGTTTTCTCAGTTTGGATGCAGAGGGGTTTCTAGTTGGGCTGTTCTGCGAGGCTCAACTTGGGGAAAACGTGGTGTCAAGTTGGAATGGGCACTTCCCAGGAACTCCTCCTCTACTCATGTTTGTGCTACGAATGCTAACATGGCCAATGCTACGGCGGTTGAAGGAGGCGTCAGATGTGTCTGCCAGAATGGATATGTTGGTGATGGTTTTGCTAATGGAACTGGATGTTTGCAGGCCTGCATAAAGGATGGAAAGGAAGCATATGGAAGTGACTGCTATATCAAAAGACATGATCAAAGGAAATTTGTTATGATTGCCGGAATCATTGGCCCAGTTCTCATTGTTGCCTCCCTGGTTGCACTATTTTATCTTCTTAAAAGGCCAACAAAACCAGGGATGTTTGACACAGAGCAGGCTTACTATCAAAACATTACAATCCCCAAAGCTTGTAAAACTCGGTTATTCAGCCTCCATGAGCTAGAAGAAGCCACTAAGGGTTTTGAAGAGGGTCAGAAACTAATGCATGACAATAATGGGACAATTTTCGCTGGAGTTTTAGGGGATGGATCTCACATAGCTGTCCACAAGTTAAAGTGTGAGAAGAATGACTTAATCCAAGTCCTGTCACAAATCGAGGTTCTATCTTCTGTTGTGCATAGAAACATGGCCCGAATTCTTGGATGCTGTATTGAATCTGGCAACACTCTAGTAGTTTATGAGTATACTTCCAATGGTACTCTGGAGGAACATTTACATCAAAGCAAAGGACAACAACTTCGTTTAGATTGGTATAGTAGATTGACTATTGCTGCACAAACAGCTAGTGTTCTAGCATTCTTACACTACGAGAAAAATCCTCCCATACTTCACCATAACCTTAAATCTGCCTGCATCTTCCTAGATGATGATTATTCTGTCAAGATTGCAGGATTTGGCCTGATCAACTCCAATTTTTACTATGGTTCTAACTTACAAAAGAACTGTGAAGGATTTGGCATCTGCAAAAATGATGTTTATGACATGGGTGTGTTGCTTCTTGAGATTATCTCAGGCTCAAATCAGTTGGATTCACCAACGTTGGCCTTACAGCATATAAGGGCTGGAAAATTTGAGGAAATTATGGACCCATTTCTTTGCTATGATGAACAGCCACATTATCGGCAAGAGCAAATGCAAATAATTGCAGATCTTGCTACAAGGTGCCTGTTATTTGGTGTAGATGGAAGGCTAGGAATGATTGATGTTGTGAGGGAGTTAGTACACATGACTAAAGAAAGTCTTGATGGAGGAATTATGAAAGGACCTGCACTGGAGGAGACATTCTCAAATTCAAGCCTTCTTCAGATGATATCAATGTCTCCTGATTCTATGAATGTCCCTTGA 2103 0.428 MYPIPQTNRLLLLQFLCLLHTTHYHLPDFATLLLSSCTFSSLLSIPFWAIYYYYTVFPPSSSSQNQHILYTTMSPIVLLTFLVLLLCFPFSCYSCNETCGDLHVPFPFYVNTSCESISSAFHLSCSNSSALLLRIGSVSYTVLEFFPDGVLVDFPGSSSCRLYNDLNSFGRNFAGNNKDMFGVSVDNVIGLYDCEDSSLCKADCETIDMPGCDGKGGGSLACCYPLSDHTIWHAGDGFSVFSQFGCRGVSSWAVLRGSTWGKRGVKLEWALPRNSSSTHVCATNANMANATAVEGGVRCVCQNGYVGDGFANGTGCLQACIKDGKEAYGSDCYIKRHDQRKFVMIAGIIGPVLIVASLVALFYLLKRPTKPGMFDTEQAYYQNITIPKACKTRLFSLHELEEATKGFEEGQKLMHDNNGTIFAGVLGDGSHIAVHKLKCEKNDLIQVLSQIEVLSSVVHRNMARILGCCIESGNTLVVYEYTSNGTLEEHLHQSKGQQLRLDWYSRLTIAAQTASVLAFLHYEKNPPILHHNLKSACIFLDDDYSVKIAGFGLINSNFYYGSNLQKNCEGFGICKNDVYDMGVLLLEIISGSNQLDSPTLALQHIRAGKFEEIMDPFLCYDEQPHYRQEQMQIIADLATRCLLFGVDGRLGMIDVVRELVHMTKESLDGGIMKGPALEETFSNSSLLQMISMSPDSMNVP* 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g2231 700 ProSiteProfiles Protein kinase domain profile. 407 664 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso3g2231 700 Pfam Wall-associated receptor kinase galacturonan-binding 95 145 IPR025287 GO:0030247
Gso3g2231 700 Gene3D Transferase(Phosphotransferase) domain 1 482 670 - -
Gso3g2231 700 Pfam Protein tyrosine and serine/threonine kinase 410 557 IPR001245 GO:0004672|GO:0006468
Gso3g2231 700 Gene3D Phosphorylase Kinase; domain 1 374 481 - -
Gso3g2231 700 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 104 695 IPR045274 GO:0007166
Gso3g2231 700 SUPERFAMILY Protein kinase-like (PK-like) 390 659 IPR011009 -
Gso3g2231 700 PANTHER OS10G0351500 PROTEIN 104 695 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g2231 Gso-Chr3 47448059 47451076 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g2231 95 662 Receptor kinase-like Gene Family AT2G23450 29.967 5.57e-60 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_URK-3 Gso3g2231 PK_Tyr_Ser-Thr 3.8e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g2231 - - gmx:100779880 1417.91