Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g2230 ATGGACGCCGACTCCTCTGGAGAAGAAGTGGTTATTAAAACAAGAAAACCATATACTATCACAAAGCAAAGAGAACGATGGACAGAGGAGGAACATAACAGATTTCTAGAAGCCTTGAAGCTATACGGGCGAGCATGGCAGCGCATAGAAGAGCATATAGGAACAAAGACTGCTGTACAAATCAGGAGTCATGCTCAGAAATTCTTTACAAAGTTGGAGAAAGAGGCCTTTGTAAAAGGTGTTCCAATAGGACAAGCTCTTGATATAGACATCCCCCCTCCACGGCCAAAAAGAAAACCAAGCAATCCTTATCCCCGGAAGACCAATGTTGGTGCCCCAACATTACATAGCGAAGCAAAGCATGGAAAGTCTCTCATTTCAATTGCATCTTCACATGGTAAACAAGCACTGGACTTGGAGAAAGAACCACTTCCAGAGAAGCATAATGTCGACCTAAGGCCAACGACTGTAAAAGAAAATAAGGACGGAAGCTGCTTAAACGTATTTACCATTATCCAAGAGGCACCCTGTTCATCTGTATCTTCCGCCAACAAGAATTCAACATCAATATCAGTGCCACTGAGAAATTCATGTGCCCTAAGGGAGTTTATACCTTCGGTAAAAGAGGTAATAACTCGAGATGAAACCAACGAATCTTTTGTTACTGATGAGCTTGAAAATCAGAAGTTGGAGATAGATGATGGCAAGCACACACAAAAGACTAATGACACTTGTGAAGTCTCTAAGTTGGAGAATTCTGGTGCTTCAGAATTGGTTCAAACTGAGAAAACAGATGGTCGTAATTGTGCATTAACAATAGATGGGGTGCCAGGCAATCAGAATTACCCAAGACATGTCCCTGTGCACGTTGTTGATGGGAACCTTGGAACTAGTACTCAAAATCTATCCCCAGATATGGTGTTTCAAGACTCCATATTTCAGCCGAAGGGAGGGGTTAATAGGCAACCTAACCTTGTCACCAATTCTGCTACATCACACATAAGTGAATGTCAAAACAACGCCGCACGGTCCTCTATTCATCAATCATTTCCTCCTAGTCCTCCTTTCGCACAGGATGATTATCATTCATTTCTTCACATGTCCTCCACATTTTCAAGTCTTATTGTCTCTACCTTGCTGCAAAACCCTGCAGCCCATGCTGCAGCGAGTTTTGCTGCTACATTTTGGCCATATGCAAATGCAGAAACTTCTGCAGATTCTCCCGTGTGCACTCCAGATTTTCCATCAAGACAAATTGGCTCGCCTCCAAGTGTGACAGCTATTGCAGCTGCTACAGTAGCTGCTGCAACTGCATGGTGGGCTGCCCATGGACTGCTTCCTTTATGTGGTCCACTCCATACAGCTTTTGCCTGTCCTCCTGCATCAGCAACTACAGTTCCATCAATGATTATTGATGAATCACCACAAAAAACAGAACGAGGAGAGATTAAACCACAAAATCCTCCTCTGCAAGATCAGATACCGGATCCAGAACACTCGGAAGCTCAACATTCAGCTCCTAAGTCACCAGCTGTTTCTTCATCCAAATCTGAGGATAGGGGAGATGCCAATTTAGATACTTCACCAAAGGCTACTAATCATGAGATGAACCAAGCAATTTCTGAGAACCCCGATTCCAACAAAATGAAGGGCAGAAAACCTGTAGACCGTTCCTCATGTGGTTCCAACACAACCTCTAGCAGTGAAGAGACTGAGTTACTAGAGAAGGATGAGAAAGAAAAGGAAGAGCCCAAAACACCTGATGCGAACGTTTTAGATACCGAGCTTAGTAATCGTCGAAGTAGAAGCATTAGCAACCTTACTGATTCTTGGAAGGAGGTCTCTGAAGAGGGGCGGCTTGCCTTTCAGGCTCTATTCTCCAGAGAGGTGTTGCCACAAAGCTTTTCACCTACTCATCATTTGATAAATAAAGATAATCAGATAGATAGCATCAAGGATAACGAGCTAAACACAGACTACAAAGATGAAGACCTTGAAAGCAAGAAATGCAGTTCTATTTGTGATGGGGTGCAGAAAAATCTGCTATTTGTCAAAGATAACAATGAGGAGGAGGGACTGCTAACCATAGGTCTTGGACCAGGAAAGCTAAAGACTCGTCGAACAGGGTTTAAACCTTACAAAAGATGTTCGGTAGAGGCCAATGAAAACAGGATCGGAACAGCCTGCATCCAAGGTGAAGAAAAAGGTCCCAAGAGATTACGCTTGAATGGGGAGGCTTCAACTTGA 2247 0.4348 MDADSSGEEVVIKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQIRSHAQKFFTKLEKEAFVKGVPIGQALDIDIPPPRPKRKPSNPYPRKTNVGAPTLHSEAKHGKSLISIASSHGKQALDLEKEPLPEKHNVDLRPTTVKENKDGSCLNVFTIIQEAPCSSVSSANKNSTSISVPLRNSCALREFIPSVKEVITRDETNESFVTDELENQKLEIDDGKHTQKTNDTCEVSKLENSGASELVQTEKTDGRNCALTIDGVPGNQNYPRHVPVHVVDGNLGTSTQNLSPDMVFQDSIFQPKGGVNRQPNLVTNSATSHISECQNNAARSSIHQSFPPSPPFAQDDYHSFLHMSSTFSSLIVSTLLQNPAAHAAASFAATFWPYANAETSADSPVCTPDFPSRQIGSPPSVTAIAAATVAAATAWWAAHGLLPLCGPLHTAFACPPASATTVPSMIIDESPQKTERGEIKPQNPPLQDQIPDPEHSEAQHSAPKSPAVSSSKSEDRGDANLDTSPKATNHEMNQAISENPDSNKMKGRKPVDRSSCGSNTTSSSEETELLEKDEKEKEEPKTPDANVLDTELSNRRSRSISNLTDSWKEVSEEGRLAFQALFSREVLPQSFSPTHHLINKDNQIDSIKDNELNTDYKDEDLESKKCSSICDGVQKNLLFVKDNNEEEGLLTIGLGPGKLKTRRTGFKPYKRCSVEANENRIGTACIQGEEKGPKRLRLNGEAST* 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g2230 748 ProSiteProfiles Myb-like domain profile. 19 69 IPR001005 -
Gso3g2230 748 PANTHER PROTEIN LHY 2 730 - -
Gso3g2230 748 SUPERFAMILY Homeodomain-like 18 74 IPR009057 -
Gso3g2230 748 MobiDBLite consensus disorder prediction 87 118 - -
Gso3g2230 748 MobiDBLite consensus disorder prediction 526 545 - -
Gso3g2230 748 PANTHER SWI/SNF COMPLEX-RELATED 2 730 - -
Gso3g2230 748 SMART sant 23 71 IPR001005 -
Gso3g2230 748 Gene3D - 26 73 - -
Gso3g2230 748 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 22 71 IPR006447 GO:0003677
Gso3g2230 748 MobiDBLite consensus disorder prediction 570 589 - -
Gso3g2230 748 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 19 73 IPR017930 -
Gso3g2230 748 MobiDBLite consensus disorder prediction 477 597 - -
Gso3g2230 748 CDD SANT 26 69 IPR001005 -
Gso3g2230 748 Pfam Myb-like DNA-binding domain 24 67 IPR001005 -
Gso3g2230 748 ProSiteProfiles SANT domain profile. 22 73 IPR017884 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g2230 Gso-Chr3 47436453 47445054 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gso3g2230 Myb_DNA-binding 2.7e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g2230 K12133 - gmx:778086 1387.47