Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g2226 ATGGGTCTAGTGGCGGCTGACAAGGGTTCGATGCAGACCCAAGAGGAACAGAGCGACAATGCCTCCGCTGTTCAGTGGGAACGCTTTCTGCCTCGGATGGTGCTTCGGGTCTTGCTTGTCGAAGCTGATGATTCTACTCGACAGATCATTTCTGCACTTCTCCATAAATGCAGTTACAAAGTTGTCGCATTTTGTGACGGCTTAAAGGCATGGGAGACATTGAAGAACAAACCATCTGACATAGATCTCATATTAACAGAAGTGGATTTGCCATCAATATCTGGATTCTCACTTCTTACTTTAATCATGGAGCATGACATTTGCAAAAACATTCCCGTCATAATGATGTCTTCTCATGATTCCGTTAGCATGGTACTCAAATGCATGTTAAAAGGTGCAGCTGATTTTCTTATAAAACCTGTTCGCAGGAATGAGCTAAGAAACTTGTGGCAGCATGTATGGAGAAGGCACGCCATAAGCAGGCCTCCTCAAAATTTTACACTACCAGAGATTGAAATTGGTTTTGCTGCAGAAAACCATGCTGCAAGCAATGACTCTAGTGGTTCTGTGGCTTCTACAGCAAAAAATGGTGAATGCAGCGAGAAAACAAGTGAGGCTCAAAGCACTTGTACATCGCCATTTTTGGAAGCTGAGAGTACATACTTGGAAAATATGCAGGATATATCGCAGCTGAAGAGGTCTTCAAATTTGAGCAATATTGACACGGTGAAGCATGAAAATTCTACCAAATGTGAAAGGGAATCAGATAAGCATAATGATGAAGCTGGAGAGAAATCACTGTTTGTATCAGAAGATTCAAGGTGCAACAAAACTTTTAAACCAACAGGTTTAAGGCTAGGTCAAGGCTATGAATGCTGTGAAACGAGAAATCAAGATGTAGTTCTAAAAATAGAGTTGATCAAATCCAATCCTGAAATTAATACAGATATTCATGGATGCAGTGATGAACTGGTAGATCCTTATACCGGGGCCATTGACTTGATTGCTACATTCAAGAATCTTCCAAAGAGCACTGATGAAAAATGTAGTTTCAGTAGTGGTAACACTGCCAAGTTTGATTTTGATACACAATTGGAACTTTCTTTAAGAAGAAGAGATTTTCCTGGAAGCTCATGTAAAGCTGCATCTGAGGAAAGGCAATTATTGAACCATTCAAATGCTTCTGCCTTTTCTAGGTATAGTAGTAGTAAGTTGTTGCAGCCCCTTTTTCCAACACCATCAACTATCTCTGCTAAATTAACAAATTCCAGTCTGAGTTCTCATGAATCCCATAAATTCTCAGAAAATGCATCTACTTCTCATCAATATGGTGGAAAAAATCAAAATCAGGAGAAAATTATCACTCCAGTCATTGGTCAGTCTGGACAAGTTGATCCAAAATTACCAAACAGTCAACTTGGATATTTTCCTGCTACAGGGGTTACTTCTGATCACAAGTCTACAGGAAATGGAAATGTCTTCCCTTCTATGCTTTATGCAGAATCAGGTGTCCATCCCATATGGACTCCAAAATCAGTGTGCCAGAAAGAAAGTTCTCCATTTCCCACAATCACTTCATCCCAGTCCAATCCTCAAAGTCACAACTCAGAATGTCATCTCTGGTCGGAAGATTCAACCCATGCTTCTGATAAAAATTTAAATGATCAAATTAATTTGGATTGTGAGACACATGACTCTCCTGATGCTAGTCAGAGTGCTGGTACTAGTTTTTTCCACGACACAGCAAATCATAATAGTAGCGGTGTATACAGAAGCATGGGCTGCAGAAGTGATGGAAATGCTACTTCAGCTAAGGTAGCCAAGGAGAGCCATGGAAGTTTTATTGATAGTGGTCACTGCAGTTATGATGGATTCATAGGGACAGATTCTCATCGCACAAGCCACCGAGAAGCAGCTCTGACAAAGTTTCGACTGAAGCGGAAAGACAGATGCTATGAGAAAAAGGTGCGATATCAAAGCCGGAAGAGATTGGCAGAGCAGCGCCCCCGGGTGAAAGGGCAGTTTGTTCGCCAAGTACAAGATGATCATCCAGTAGCAGATGTGGGTGGTGGTTCCTGA 2079 0.4137 MGLVAADKGSMQTQEEQSDNASAVQWERFLPRMVLRVLLVEADDSTRQIISALLHKCSYKVVAFCDGLKAWETLKNKPSDIDLILTEVDLPSISGFSLLTLIMEHDICKNIPVIMMSSHDSVSMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHAISRPPQNFTLPEIEIGFAAENHAASNDSSGSVASTAKNGECSEKTSEAQSTCTSPFLEAESTYLENMQDISQLKRSSNLSNIDTVKHENSTKCERESDKHNDEAGEKSLFVSEDSRCNKTFKPTGLRLGQGYECCETRNQDVVLKIELIKSNPEINTDIHGCSDELVDPYTGAIDLIATFKNLPKSTDEKCSFSSGNTAKFDFDTQLELSLRRRDFPGSSCKAASEERQLLNHSNASAFSRYSSSKLLQPLFPTPSTISAKLTNSSLSSHESHKFSENASTSHQYGGKNQNQEKIITPVIGQSGQVDPKLPNSQLGYFPATGVTSDHKSTGNGNVFPSMLYAESGVHPIWTPKSVCQKESSPFPTITSSQSNPQSHNSECHLWSEDSTHASDKNLNDQINLDCETHDSPDASQSAGTSFFHDTANHNSSGVYRSMGCRSDGNATSAKVAKESHGSFIDSGHCSYDGFIGTDSHRTSHREAALTKFRLKRKDRCYEKKVRYQSRKRLAEQRPRVKGQFVRQVQDDHPVADVGGGS* 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g2226 692 MobiDBLite consensus disorder prediction 662 692 - -
Gso3g2226 692 ProSiteProfiles CCT domain profile. 636 678 IPR010402 GO:0005515
Gso3g2226 692 MobiDBLite consensus disorder prediction 421 447 - -
Gso3g2226 692 Pfam CCT motif 636 678 IPR010402 GO:0005515
Gso3g2226 692 CDD psREC_PRR 37 140 - -
Gso3g2226 692 MobiDBLite consensus disorder prediction 245 265 - -
Gso3g2226 692 ProSiteProfiles Response regulatory domain profile. 36 154 IPR001789 GO:0000160
Gso3g2226 692 SUPERFAMILY CheY-like 35 163 IPR011006 -
Gso3g2226 692 Gene3D - 33 267 - -
Gso3g2226 692 SMART REC_2 35 150 IPR001789 GO:0000160
Gso3g2226 692 MobiDBLite consensus disorder prediction 515 538 - -
Gso3g2226 692 Pfam Response regulator receiver domain 37 148 IPR001789 GO:0000160
Gso3g2226 692 PANTHER TWO-COMPONENT RESPONSE REGULATOR 22 233 IPR045279 GO:0009736
Gso3g2226 692 PANTHER TWO-COMPONENT RESPONSE REGULATOR 237 675 IPR045279 GO:0009736
Gso3g2226 692 PANTHER PRR RESPONSE REGULATOR 22 233 - -
Gso3g2226 692 PANTHER PRR RESPONSE REGULATOR 237 675 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g2226 Gso-Chr3 47416321 47421253 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g2226 635 680 Response Regulator Gene Family AT5G24470 89.130 2.00e-20 93.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Gso3g2226 Response_reg 1.2e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g2226 K12130 - gmx:100779346 1390.94