Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g2220 ATGTCAGAAGGTGCAGAAATTGATGAGCGTGTGGACCTTGACGAGGAAAATTATATGGAAGAGATGGATGATGATGTTGAAGAACAAATAGATGATGATGGAGTGGATGGAGGTGAAGATGAAAATGCTGAAGGTAGTGTTGAAGAACATGAATATGAGGACTCAGCAGCTGAGGCTGGTGGGAAAGACCAATTGCCTGAAGCAGAAAAAAGTGACATTGCTACTGAATTTGGGGATGATGAGCAAAAATTGTCTTTCATTGATGAAGATGAGAAAGAGAAGCATGATGAACTTCTTGCCCTTCCACCTCATGGTTCTGAAGTCTTTATTGGTGGACTTCCTCGGGATGTATGTGAAGATGATTTAAGGGAATTGTGCGAGCCTATGGGTGATATTCTTGAGGTGCGACTAATGAAAGACAGGGACACTGGAGAACACAAGGGTTATGCCTTTGTGGCTTTTAAAACAAAAGAGGTAGCACAAAAGGCTATTGAGGAGATACATAGCAAGGAATTTAAGGGGAAAACTTTGAGGTGTTCACTTTCTGAAACCAAACACAGATTATTCATTGGTAATGTTCCAAAAACTTGGACTGAAGATGATTTTAGGAAAGTTGTTGAAGGTGTTGGTCCCGGAGTTGAAACCATTGAGCTCATAAAGGATCCTCAAAATCCTAGTAGGAATCGTGGGTTTGCGTTTGTTTTGTATTACAATAATGCATGTGCTGATTATTCGCGGCAAAAGATGGCAAGTTCTAGCTTTAAGCTGGATGGCAACACCCCAACTGTCACATGGGCAGATCCAAAGAACTCACCTGACCATTCTGCTTCTTCACAGGTTAAAGCTCTATACGTCAAAAACATACCAGAGAATGTTACCACTGAACAATTGAAGGAACTATTCCGCCGTCATGGAGAAGTAACAAAAGTGGTCATGCCACCTGGCAAAGCTGGAGGGAAACGCGATTTTGGTTTTATTCATTATGCGGAGAGGTCAAGTGCATTGAAAGCTGTAAAAGATACAGAGAAATATGAAATTGATGGCCAAATGCTTGAAGTTGTTCTTGCCAAGCCTCAAGCTGATAAAAAACCTGATGGAGGTTATGCCTACAATCCTGGACTTCATCCGAACCATGTTCCACATCCTGCATATGGTAACTTTTCTGGAAATCCTTATGGCTCTTTAGGGGCTGGATATGGTGTTGCTGCTGGTTATCAACAGCCAATGATATATGGCAGGGGTCCAATGCCAGCAGGAATGCAAATGGTTCCAATGATGTTACCAGATGGTCGAATTGGCTATGTTCTTCAACAACCCGGTGTACAAGTGCCGCCTGCCCGACCCCGCAGAAATGATCGGAGCAATGGTCCAAGTGGGCAGCCAGGGCGAGGAGGAGGAGGAGCTAGTGGCAATGATGAAGGCAATCGTAGTAGAAGGTATCGACCTTATTAG 1452 0.4339 MSEGAEIDERVDLDEENYMEEMDDDVEEQIDDDGVDGGEDENAEGSVEEHEYEDSAAEAGGKDQLPEAEKSDIATEFGDDEQKLSFIDEDEKEKHDELLALPPHGSEVFIGGLPRDVCEDDLRELCEPMGDILEVRLMKDRDTGEHKGYAFVAFKTKEVAQKAIEEIHSKEFKGKTLRCSLSETKHRLFIGNVPKTWTEDDFRKVVEGVGPGVETIELIKDPQNPSRNRGFAFVLYYNNACADYSRQKMASSSFKLDGNTPTVTWADPKNSPDHSASSQVKALYVKNIPENVTTEQLKELFRRHGEVTKVVMPPGKAGGKRDFGFIHYAERSSALKAVKDTEKYEIDGQMLEVVLAKPQADKKPDGGYAYNPGLHPNHVPHPAYGNFSGNPYGSLGAGYGVAAGYQQPMIYGRGPMPAGMQMVPMMLPDGRIGYVLQQPGVQVPPARPRRNDRSNGPSGQPGRGGGGASGNDEGNRSRRYRPY* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g2220 483 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 186 268 IPR000504 GO:0003723
Gso3g2220 483 ProSitePatterns EF-hand calcium-binding domain. 40 52 IPR018247 -
Gso3g2220 483 Gene3D - 269 377 IPR012677 -
Gso3g2220 483 MobiDBLite consensus disorder prediction 1 80 - -
Gso3g2220 483 CDD RRM3_hnRNPR_like 280 358 - -
Gso3g2220 483 MobiDBLite consensus disorder prediction 439 483 - -
Gso3g2220 483 Gene3D - 8 186 IPR012677 -
Gso3g2220 483 SMART rrm1_1 187 264 IPR000504 GO:0003723
Gso3g2220 483 SMART rrm1_1 282 354 IPR000504 GO:0003723
Gso3g2220 483 SMART rrm1_1 107 180 IPR000504 GO:0003723
Gso3g2220 483 CDD RRM_SF 108 180 - -
Gso3g2220 483 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 184 IPR000504 GO:0003723
Gso3g2220 483 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN Q 2 481 - -
Gso3g2220 483 SUPERFAMILY RNA-binding domain, RBD 275 372 IPR035979 GO:0003676
Gso3g2220 483 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 281 358 IPR000504 GO:0003723
Gso3g2220 483 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 178 IPR000504 GO:0003723
Gso3g2220 483 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 283 349 IPR000504 GO:0003723
Gso3g2220 483 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 188 252 IPR000504 GO:0003723
Gso3g2220 483 Gene3D - 187 267 IPR012677 -
Gso3g2220 483 MobiDBLite consensus disorder prediction 49 80 - -
Gso3g2220 483 PANTHER GEO13361P1-RELATED 2 481 - -
Gso3g2220 483 MobiDBLite consensus disorder prediction 8 48 - -
Gso3g2220 483 SUPERFAMILY RNA-binding domain, RBD 103 270 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g2220 Gso-Chr3 47362164 47369025 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g2220 108 457 Eukaryotic Initiation Factors Gene Family AT2G23350 24.416 1.39e-17 84.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g2220 K13161 - gmx:100790907 894.034