Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g2202 ATGGCAGGTGTGGGAGATGGCGATTTGTACTCGCAACTATGGAAGCTATGCGCGGGACCTTTGGTGGATGTTCCTCGCCAAGGGGAGAGAGTTTTCTACTTCCCGCAGGGTCACATGGAACAATTGCAAGCTTCGACTAATCAGGGACTGAACCAGGAAATTCCTCATTTCAATCTCCCACCCAAGATTCTCTGCCGTGTTGTGCACATTCAGTTGTTGGCGGAACAAGAAACCGATGAAGTTTATGCTCGTGTCACTTTGCTTCCAGAATCCAATCAAGAAGAACCAACGAGTCCAGACCCAAGTCCACCCGAGACCCAGAAACAAGTTTTTCACACTTTTAGTAAGATATTAACTGCTTCTGATACTAGCACACATGGAGGATTTTCAGTTCTGCGGAGGCACGCTACCGAGTGTCTGCCTCAATTGGACATGACCCAAACTACTCCCACTCAGGAATTGGTAGCGGAGGATCTTCATGGGTTTGAGTGGAAGTTTAAGCATATATTCAGAGGTCAACCAAGGAGGCACTTGCTTACAACTGGCTGGAGTACATTTGTCACATCCAAAAAACTGGTTGCGGGAGATGCTTTTGTGTTTTTAAGGGGAGAGAATGGTGAACTGAGAGTTGGTGTCAGGCGTGTAGCCCGGCAACAGAGTCCCATGCCTTCATCTGTGATATCAAGCCAGAGTATGCATCTTGGAGTGCTTGCCACTGCCTCTCATGCATTTTTGACAAGTACCATGTTTGTGGTTTATTACAAACCTAGCATGCCTTTCCATACATTCAGGACTAGCCAGTTTATTATTGGTGTAAACAAATATCTGGAGGCAGAAAACAATAAGTTTTCAGTTGGCATGCGTTTTAAGATGAGATTTGAGGTGGAGGACTCACCTGAGAGAAGGTTTTCTGGTACTATTGTCGGGGTTGGGGATGTATCTCCAGGATGGTGGAACTCTCAGTGGCGTTCATTGAAGGTTCAATGGGATGAACCGGCAATAATTCCAAGGCCAGAGAGGGTTTCTTCGTGGGAGATAGAGCCTTTTGCTGCTTCCACTGCTTTGAATGTCACTCAACAACTGGTGAAGAGCAAAAGGTCCAGGACTGAGGTTTCATCTTCTGAAATTGCTCCTAATTCCCCTGCTCTAGCATTCTGGTATCGTGGACCACAAGACCCTACAGCATTAGGTAGCAGTACAGAGGTCCAAAGCAATGAAAATCCAGTTGTATGGTCTACTCGACAGAAAGAAATTAATGGCAATCCTATGAACAGCAGCTCCAAAGTCCGCGTGGAAGGAATGCGGCCTTCTTCCCCACATTCAAAACCAAACCTTTTTATGGACCCCAAAAATTGCAAAGCTGTCCCAGCACAATCAACTGTTTCATCTAGGCCGAAAGATGATTTGGCACATGATCCCATGGAATGTGCTAAAAGGAGTAGTCAGAATCCCATGAATTGTTGGATATTTGGAGTAAATTTGACTAACAATATTACTAACAATGTTACCCTTCCGGATAAAGAACAATTGGGATGTCCCGCTATTATTCCCAGTGGTCCCAAAGATTCTATTCCTGTTGCTGCATGTGAAACTGAGGCTGGTCAGAATCCCTATTATTCACTGTCCAATAAGGAGCACAAGCAAAATATTTCTGATGGATCACCCAGTGCCAGTCAGAGACACACCAGGACTCGGACCAAGGTGCAAATGCAAGGTATTGCTGTTGGTCGTGCAGTTGACCTTACCGTGTTAAAAGATTATGATGATCTCATAGATGAGCTTGAGAAAATGTTTGATATTAAGGGAGAGCTTCAAATGCAAACTAAGTGGGCTATTACTTTTACTGATGATGGAAATGACATGATGCTCGTTGGTGATGATCCATGGCCGGAGTTTTGTACCGTGGTGAAGAGGATTTTCATTTGTTCAAGGGAAGATGTGAAGAAGATGAAAAGCAAGCATTCTTCTTCTTCATCAGTGGGTGAAGAAACTTTGTTGAGCCAAGATTGA 2010 0.4463 MAGVGDGDLYSQLWKLCAGPLVDVPRQGERVFYFPQGHMEQLQASTNQGLNQEIPHFNLPPKILCRVVHIQLLAEQETDEVYARVTLLPESNQEEPTSPDPSPPETQKQVFHTFSKILTASDTSTHGGFSVLRRHATECLPQLDMTQTTPTQELVAEDLHGFEWKFKHIFRGQPRRHLLTTGWSTFVTSKKLVAGDAFVFLRGENGELRVGVRRVARQQSPMPSSVISSQSMHLGVLATASHAFLTSTMFVVYYKPSMPFHTFRTSQFIIGVNKYLEAENNKFSVGMRFKMRFEVEDSPERRFSGTIVGVGDVSPGWWNSQWRSLKVQWDEPAIIPRPERVSSWEIEPFAASTALNVTQQLVKSKRSRTEVSSSEIAPNSPALAFWYRGPQDPTALGSSTEVQSNENPVVWSTRQKEINGNPMNSSSKVRVEGMRPSSPHSKPNLFMDPKNCKAVPAQSTVSSRPKDDLAHDPMECAKRSSQNPMNCWIFGVNLTNNITNNVTLPDKEQLGCPAIIPSGPKDSIPVAACETEAGQNPYYSLSNKEHKQNISDGSPSASQRHTRTRTKVQMQGIAVGRAVDLTVLKDYDDLIDELEKMFDIKGELQMQTKWAITFTDDGNDMMLVGDDPWPEFCTVVKRIFICSREDVKKMKSKHSSSSSVGEETLLSQD* 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g2202 669 Coils Coil 667 669 - -
Gso3g2202 669 MobiDBLite consensus disorder prediction 545 565 - -
Gso3g2202 669 SUPERFAMILY CAD & PB1 domains 554 639 - -
Gso3g2202 669 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 3 656 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gso3g2202 669 SUPERFAMILY DNA-binding pseudobarrel domain 105 243 IPR015300 -
Gso3g2202 669 CDD B3_DNA 114 214 IPR003340 GO:0003677
Gso3g2202 669 MobiDBLite consensus disorder prediction 417 450 - -
Gso3g2202 669 Pfam B3 DNA binding domain 114 214 IPR003340 GO:0003677
Gso3g2202 669 ProSiteProfiles B3 DNA-binding domain profile. 114 216 IPR003340 GO:0003677
Gso3g2202 669 Pfam Auxin response factor 240 326 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gso3g2202 669 Gene3D - 111 215 IPR015300 -
Gso3g2202 669 SMART B3_2 114 216 IPR003340 GO:0003677
Gso3g2202 669 Gene3D - 558 651 - -
Gso3g2202 669 Gene3D - 282 355 - -
Gso3g2202 669 ProSiteProfiles PB1 domain profile. 563 644 IPR000270 GO:0005515
Gso3g2202 669 MobiDBLite consensus disorder prediction 417 432 - -
Gso3g2202 669 MobiDBLite consensus disorder prediction 649 669 - -
Gso3g2202 669 PANTHER AUXIN RESPONSE FACTOR 11 3 656 - -
Gso3g2202 669 Pfam AUX/IAA family 545 599 IPR033389 -
Gso3g2202 669 Pfam AUX/IAA family 607 644 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g2202 Gso-Chr3 47202405 47207099 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g2202 3 653 B3 DNA Binding Superfamily AT2G46530 56.049 0.0 662
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gso3g2202 B3 7.2e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g2202 K14486 - gmx:100820503 1312.36