Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g2201 ATGGACCATCAACCTCCACCGTGCCCCGCCGCCGCCTCCGCAACGGACAACCCTCGTGGCGGAACGCGCCACCCCATGTACCGCGGCGTCCGCAAGCGCCGGTGGGGCAAATGGGTCTCCGAAATCCGGGAGCCACGGAAGAAGAACCGCATATGGTTGGGGTCGTTTCCGGTGCCGGAGATGGCGGCACGAGCATACGACGTCGCAGCCTACTGCCTCAAAGGCCGGAAGGCGCAGCTCAACTTTCCCGACGACGTCGACTCCCTGCCGCTTCCGTCGTCCCGCACGGCAAGAGACATTCAGACCGCCGCGGCCCAGGCGGCGCGTATGATGAAAGCTTCCGGCAATGATGAGAAAAGCGGCATTGCCTCCGACGACGGCGATAGCGGTTGCGATGATTTTTGGGGCGAGATTGAGTTGCCAGAGCTGATGGACGGCGAGTGCTGCTGGGGTTGTCCGGCCGGCGCTTCCTCCTGGACTTCCTCCGGCGATCTCGCCGAGTGGCCGGAGGAGGAGCTTTCGCCGCAGCAACCGTCGTTTATGGCATGTCTATAA 555 0.6378 MDHQPPPCPAAASATDNPRGGTRHPMYRGVRKRRWGKWVSEIREPRKKNRIWLGSFPVPEMAARAYDVAAYCLKGRKAQLNFPDDVDSLPLPSSRTARDIQTAAAQAARMMKASGNDEKSGIASDDGDSGCDDFWGEIELPELMDGECCWGCPAGASSWTSSGDLAEWPEEELSPQQPSFMACL* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g2201 184 MobiDBLite consensus disorder prediction 1 24 - -
Gso3g2201 184 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 12 184 - -
Gso3g2201 184 SMART rav1_2 26 89 IPR001471 GO:0003700|GO:0006355
Gso3g2201 184 PRINTS Ethylene responsive element binding protein signature 27 38 IPR001471 GO:0003700|GO:0006355
Gso3g2201 184 PRINTS Ethylene responsive element binding protein signature 65 85 IPR001471 GO:0003700|GO:0006355
Gso3g2201 184 ProSiteProfiles AP2/ERF domain profile. 26 83 IPR001471 GO:0003700|GO:0006355
Gso3g2201 184 MobiDBLite consensus disorder prediction 161 184 - -
Gso3g2201 184 CDD AP2 27 85 IPR001471 GO:0003700|GO:0006355
Gso3g2201 184 Pfam AP2 domain 26 75 IPR001471 GO:0003700|GO:0006355
Gso3g2201 184 Gene3D AP2/ERF domain 26 84 IPR036955 GO:0003700|GO:0006355
Gso3g2201 184 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 12 184 - -
Gso3g2201 184 SUPERFAMILY DNA-binding domain 26 85 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g2201 Gso-Chr3 47185077 47185831 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g2201 10 184 AP2-EREBP Transcription Factor Family AT1G01250 54.497 6.32e-55 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso3g2201 AP2 5.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g2201 K09286 - gmx:100819971 375.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g2159 19 50073864 50074561 Gso3g2201 3 47185077 47185831 GST
Gso3g2201 3 47185077 47185831 Gso7g0489 7 4894295 4895147 PCT
Gso3g2201 3 47185077 47185831 Gso16g0195 16 2270653 2271526 PCT
Gso7g0489 7 4894295 4895147 Gso3g2201 3 47185077 47185831 PCT
Gso16g0195 16 2270653 2271526 Gso3g2201 3 47185077 47185831 PCT