Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g2200 ATGTATTTTATTTCTGTTGAGGAGATGAAGGTTGACGCGGGGTTAGGGCGCGTGGTGTGGGACGATGAGGACAAGGCCATGCTTGGGGCTGTTCTGGGTGGTCGAGCTTTGGAGTTCCTAATGACGAACTCCGTGTCGAATGAGAGTGTTTTAATGGCGGTTGGGAGCGACGAGGGACTTCAGAAAAAGCTGTCGGATCTGGTGGAGCGTCCCCACGTGTCCAATTTCAGTTGGAACTACGCCATTTTCTGGCAGCTCTCGCAGTCCAAATCCGGTGACTGGGTTCTGGGTTGGGGAGACGGGTGCTGCAGGGAACCCAACGAGGAAGAAGAGGAGGGTGCTGTGACTGTGAGAAGACGAACACTGCGCGTGGACGAGGAGGAGATGCAGCAGAGGATGCGGAAGCTGGTGCTGCAGAAGCTGCACACCACGTTCGGGGGCGAGGATGATGACAATTACGCTTTTGGCCTCGACCACGTCACCGACACCGAGATGTTCTTTCTGGCTTCCATGTACTTCTCATTCCCTCGCGGCCATGGTGCCCCAGGTAAGTGCTTCGCCTCCGGGAACCATTTCTGGCTCAAATCTGTCTCTGTGTCTGATCACTGCGTGCGTTCTTCCTTGGCTAACGCTGCGGGAATTCAGACTATTGTTTTGGTACCTACTGATTTGGGAGTCGTGGAGTTGGGTTCTGTCAGAATGTTACCCGAGAGTTTTGAACTCTTGCAGGCTGTTAAATCTGTGTTCTCCACGCCGATTCCCAAGGTTTTGGTGAACACAATTCGCAATCAGACACATTTTAGAGAGAAACTTGCTGTTAGAAAAATGGAGGATAATAGGCCTTGGAACAACAACAACGTTAGTTTTCCGAATGTGCGGAGCAATGGCCTTCATGTTTCAAGTTGTTGGCCAGTGAATTCGGGTTTGAGGCAGCCTGCTCCTAGGGTGGTGGCGGAGCTGGCTAATGGTGTGAGACAGGATTTGAGGCTGAGCAATAGCTATGAACCTCAAAGACAGGTGCAAATGCAAATTGACTTTAGCGGAGGCACTAGCAGGCCTTCTGATGTGGAGGCCTCTTGCAAGGAGGAGCAACCGAGTGTTGCCGATGAAAGGAAGCCCAGGAAGCGGGGAAGGAAGCCCGCCAATGGCAGGGAAGAGCCCCTCAATCATGTGGAGGCCGAGAGGCAAAGGCGCGAGAAGCTCAACCAGCGCTTCTATGCGTTGAGATCTGTGGTGCCCAACATCTCCAAGATGGACAAGGCCTCATTGTTGGGAGACACCATTGCTTATATCAATGAGCTCCAGGCTAAAGTCAAGATCATGGAAGCCGAAAGAGAGAGATTTGAAAGCATTTCAAATCAGGAGAAAGAAGCTCCTGCTGATGTGGATATTCAAGCTGTTCAGGATGATGAGGTCATTGTAAGGGTGAGCTGCCCTCTTGACAATCATCCTCTTTCAAAAGTAATCCAAACATTCAACCAAACACAGATCAGTGTTGTAGAGTCTAAACTTGCTTCTGCAAATGATGCTATTTTTCACACATTTGTAATTAAGTCCCAAGGATCTGAACAGCTCACAAAGGACAAGTTGATTGCTGTTTTTTCTCCAACGGAATCCAACTCATTGCAGCCATTTTCATCAGTTGGATGGTAA 1653 0.4997 MYFISVEEMKVDAGLGRVVWDDEDKAMLGAVLGGRALEFLMTNSVSNESVLMAVGSDEGLQKKLSDLVERPHVSNFSWNYAIFWQLSQSKSGDWVLGWGDGCCREPNEEEEEGAVTVRRRTLRVDEEEMQQRMRKLVLQKLHTTFGGEDDDNYAFGLDHVTDTEMFFLASMYFSFPRGHGAPGKCFASGNHFWLKSVSVSDHCVRSSLANAAGIQTIVLVPTDLGVVELGSVRMLPESFELLQAVKSVFSTPIPKVLVNTIRNQTHFREKLAVRKMEDNRPWNNNNVSFPNVRSNGLHVSSCWPVNSGLRQPAPRVVAELANGVRQDLRLSNSYEPQRQVQMQIDFSGGTSRPSDVEASCKEEQPSVADERKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRSVVPNISKMDKASLLGDTIAYINELQAKVKIMEAERERFESISNQEKEAPADVDIQAVQDDEVIVRVSCPLDNHPLSKVIQTFNQTQISVVESKLASANDAIFHTFVIKSQGSEQLTKDKLIAVFSPTESNSLQPFSSVGW* 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g2200 550 Coils Coil 431 451 - -
Gso3g2200 550 Pfam Helix-loop-helix DNA-binding domain 389 435 IPR011598 GO:0046983
Gso3g2200 550 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 60 249 IPR025610 -
Gso3g2200 550 MobiDBLite consensus disorder prediction 356 396 - -
Gso3g2200 550 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 384 450 IPR036638 GO:0046983
Gso3g2200 550 MobiDBLite consensus disorder prediction 346 396 - -
Gso3g2200 550 PANTHER MYC 16 251 IPR045084 GO:0003700|GO:0006355
Gso3g2200 550 PANTHER MYC 253 536 IPR045084 GO:0003700|GO:0006355
Gso3g2200 550 SMART finulus 391 440 IPR011598 GO:0046983
Gso3g2200 550 CDD bHLH_AtAIB_like 382 458 - -
Gso3g2200 550 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 385 434 IPR011598 GO:0046983
Gso3g2200 550 PANTHER ABA-INDUCIBLE BHLH-TYPE TRANSCRIPTION FACTOR 253 536 - -
Gso3g2200 550 PANTHER ABA-INDUCIBLE BHLH-TYPE TRANSCRIPTION FACTOR 16 251 - -
Gso3g2200 550 Gene3D - 378 450 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g2200 Gso-Chr3 47172677 47175008 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g2200 15 549 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 49.750 0.0 523
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso3g2200 bHLH-MYC_N 3.6e-54 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g2200 - - gmx:100819439 1078.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g2158 19 50058209 50060734 Gso3g2200 3 47172677 47175008 GST
Gso3g2200 3 47172677 47175008 Gso7g0490 7 4921053 4923972 PCT
Gso3g2200 3 47172677 47175008 Gso16g0196 16 2291004 2293761 PCT
Gso7g0490 7 4921053 4923972 Gso3g2200 3 47172677 47175008 PCT
Gso16g0196 16 2291004 2293761 Gso3g2200 3 47172677 47175008 PCT