Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g2199 ATGGAAGCGGAAACTCGACGGAAAGTGGAGGAGATGCTGTTGGATATTCTGAAGAAATCCAATATTAAAGAAGCCACTGAGTTCACCATCCGAGTCGCTGCCTCCGAGCGTCTCGGCATCGACCTCTCCGACACCGCCAGTAAGCACTTCGTGAGATCCGTCGTCGAGTCTTTTCTTCTCTCCGTCGCGGCCAATGAAAAGTCCAAAGACGCAGAGAAGAAGAAGGAGAACGAAGATATTGCCGCCAAAAACGACGACGTAGCGAAGAAGGAAGATGTCGTTGCGGCCAACGAAGAAGAGTCCCGAGAGACAGAGGTGCTGCCCAAACTGAAGAGGGATGATCCCGAACGCGTTATTTGCCACCTGTCCAACAGGAGGAACGTGGCGGTGAAAGATTTCAAAGGGACAACCCTGGTCTCAATTAGGGAGTTCTATATGAAAGATGGAAAACCACTTCCTGGTTCCAAAGGGATAAGTTTATCTTCGGAACAATGGTCGACCTTCAAGAAGAGTGTTCCTGCCATAGAGGAAGCTATCAAAAAGATGGAAGAAAGGATAGGATCGGAGCCTAATGGTAAGCAAAATGGAGATGTGTCAAATTCAGTTGTTGATGTTGCTTATCTTGAGCCTAATAGTAAGCAAAAGGGAGATGCATCAAATTCAGTTGTTGATGTTGCTACTCTTGAGCCTCATGGTAAGCAAAATGGAGATGCATCAAATTCAGTTGTTGATGTTGCTCCTCTTGAGCCTCATGGTAAGCAAAATGGAGATGCATCAAACTCAGTTGTTGATGTTGCTCCTCTTGAGCCTGTCGTCCCTATTGAGGTCATCCGTTTTGATGGGAAGAATTTCCAATTCTGGGCTCCGCAGATGGAATTACTCTTGAAACAATTAAAGATTGACTATGTGCTTGATGAACCATGCCCGAACCCTACACTAGGCAAAAGTGCCAAGGCTGAAGACATTGCTGCAACCAAGGCTGCAGAAAGGAGATGGCTGAACGATGATTTGACATGTCAACGCAATATCTTGAGCCATTTATCTGATCCTCTGTACAACCTCTATGCAAACAGAAAAATGAGTGCTAAGGATTTATGGGAAGAGTTAAAACTGGTTTATCTGTATGAGGAATTCGGAACCAAAAGATCTCAAGTGAAAAAGTATCTTGAATTTCAGATGGTTGAGGAGAAAGCAGTTATTGAGCAAATCCGAGAATTAAATGGCATTGCAGATTCTATTGCTGCTGCTGGAATTTTTATTGATGACAACTTTCATGTTAGTGCCATCATTTCAAAGCTTCCGCCATCCTGGAAGGACTTCTGCATCAAGTTAATGCGTGAGGAGTATCTACCTTACCGGAAGTTAATGGAACGCATACAGATAGAGGAAGAATATCGCTATGGAGTAAAACGAGTGGTCGAATATTCTTACAGTATGGGAGGATATCACCAGGCCTATAAAGGTGGACATAGGAGAGCTGACTATAAGCCGGCACTCGGAATGTGTAGGAATAGGCCAGAAATTAATGCCAGGAGCGTACCCTGTACTGTATGTGGCAAGAGGGGACATCTTTCTAAACATTGCTGGAGAAGAAATGACAGACAAACTAATGAGAGGAAATCAGAAGAGGATGTGCGTATACCTACAGAAGTTGATACTCAGGGTGCTACCCAGTAG 1677 0.4442 MEAETRRKVEEMLLDILKKSNIKEATEFTIRVAASERLGIDLSDTASKHFVRSVVESFLLSVAANEKSKDAEKKKENEDIAAKNDDVAKKEDVVAANEEESRETEVLPKLKRDDPERVICHLSNRRNVAVKDFKGTTLVSIREFYMKDGKPLPGSKGISLSSEQWSTFKKSVPAIEEAIKKMEERIGSEPNGKQNGDVSNSVVDVAYLEPNSKQKGDASNSVVDVATLEPHGKQNGDASNSVVDVAPLEPHGKQNGDASNSVVDVAPLEPVVPIEVIRFDGKNFQFWAPQMELLLKQLKIDYVLDEPCPNPTLGKSAKAEDIAATKAAERRWLNDDLTCQRNILSHLSDPLYNLYANRKMSAKDLWEELKLVYLYEEFGTKRSQVKKYLEFQMVEEKAVIEQIRELNGIADSIAAAGIFIDDNFHVSAIISKLPPSWKDFCIKLMREEYLPYRKLMERIQIEEEYRYGVKRVVEYSYSMGGYHQAYKGGHRRADYKPALGMCRNRPEINARSVPCTVCGKRGHLSKHCWRRNDRQTNERKSEEDVRIPTEVDTQGATQ* 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g2199 558 Pfam DEK C terminal domain 5 59 IPR014876 -
Gso3g2199 558 ProSiteProfiles Zinc finger CCHC-type profile. 515 528 IPR001878 GO:0003676|GO:0008270
Gso3g2199 558 MobiDBLite consensus disorder prediction 532 549 - -
Gso3g2199 558 PANTHER PBF68 PROTEIN 1 554 - -
Gso3g2199 558 MobiDBLite consensus disorder prediction 532 558 - -
Gso3g2199 558 MobiDBLite consensus disorder prediction 230 260 - -
Gso3g2199 558 MobiDBLite consensus disorder prediction 69 106 - -
Gso3g2199 558 SUPERFAMILY ssDNA-binding transcriptional regulator domain 119 181 IPR009044 GO:0003677|GO:0006355
Gso3g2199 558 Gene3D Transcriptional Coactivator Pc4; Chain A 110 187 IPR009044 GO:0003677|GO:0006355
Gso3g2199 558 Pfam Transcriptional Coactivator p15 (PC4) 120 170 IPR003173 GO:0003677|GO:0006355
Gso3g2199 558 Pfam gag-polypeptide of LTR copia-type 332 465 - -
Gso3g2199 558 PANTHER PBF68 PROTEIN 1 554 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g2199 Gso-Chr3 47161680 47166761 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Coactivator p15 Gso3g2199 Retrotran_gag_2 1.2e-14 CL0523
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g2199 - - gmx:100818901 1102.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g2156 19 50039616 50044189 Gso3g2199 3 47161680 47166761 GST