Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g2196 ATGGAATCGAGTAGCATTGAGAGCAGCACTGTGTCATCGATGACTATGATGGAAGAGGATGAGCATCCCCATCATCAGTTTTCTTCAATCTCCAAGCTTCATAACAGTGGCCCCACCACTACCAGTGTCCATGACCTTCTTGAATGCCCCGTTTGCACCAACTCTATGTACCCTCCTATCCATCAGTGCCACAACGGTCACACACTTTGCTCAACTTGCAAGACAAGGGTACACAATCGATGCCCAACTTGCCGGCAGGAACTCGGTGATATAAGGTGTTTGGCATTAGAGAAGATAGCAGAATCACTTGAACTGCCTTGCAGATACATTTCTCTTGGGTGTCCAGAGATATTTCCCTATTACAGCAAACTTAAACATGAGGCTATTTGTAACTTCAGACCATACAACTGCCCTTATGCCGGGTCAGACTGCTCGGTGGTTGGGGATATTCCATGCCTTGTCGCTCATTTAAGGGACGACCACAGGGTTGATATGCATTCTGGATGCACTTTTAACCATCGCTATGTCAAGTCCAATCCCATGGAAGTAGAAAATGCTACATGGATGCTAACGGTTTTCCACTGTTTTGGTCAGTATTTTTGCCTCCATTTTGAGGCCTTCCAGCTGGGCATGGCTCCAGTTTACATGGCATTCCTCCGATTCATGGGTGATGAAAGAGAGGCGCGGAACTACAGCTACAGCTTGGAGGTGGGAGGAAATGGACGTAAACTAACTTTTGAGGGGAGTCCAAGAAGCATTAGAGATAGCCATAAGAAGGTAAGAGACAGCCATGATGGTCTCATCATTTACCGCAACATGGCGCTTTTCTTCTCGGGTGGAGACAGGAAAGAGTTGAAGCTACGAGTAACAGGAAGGATATGGAAAGAACAGCAAAACCCTGAAGTTTCTGAACCGGATCAAGTCCCAAATGGATCAGAGTCAATGGTGAACAACTCGGAGATAGCAAGTTTGTACCTTTTGAATTAA 987 0.461 MESSSIESSTVSSMTMMEEDEHPHHQFSSISKLHNSGPTTTSVHDLLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKIAESLELPCRYISLGCPEIFPYYSKLKHEAICNFRPYNCPYAGSDCSVVGDIPCLVAHLRDDHRVDMHSGCTFNHRYVKSNPMEVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDEREARNYSYSLEVGGNGRKLTFEGSPRSIRDSHKKVRDSHDGLIIYRNMALFFSGGDRKELKLRVTGRIWKEQQNPEVSEPDQVPNGSESMVNNSEIASLYLLN* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g2196 328 PANTHER UBIQUITIN LIGASE SINAT3 1 303 - -
Gso3g2196 328 MobiDBLite consensus disorder prediction 1 16 - -
Gso3g2196 328 Pfam Seven in absentia protein family 91 290 IPR018121 GO:0005737|GO:0006511|GO:0007275
Gso3g2196 328 ProSiteProfiles Zinc finger RING-type profile. 49 85 IPR001841 -
Gso3g2196 328 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 1 303 - -
Gso3g2196 328 SUPERFAMILY TRAF domain-like 102 294 - -
Gso3g2196 328 SUPERFAMILY RING/U-box 35 88 - -
Gso3g2196 328 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 101 IPR013083 -
Gso3g2196 328 ProSiteProfiles Zinc finger SIAH-type profile. 102 162 IPR013010 GO:0008270
Gso3g2196 328 MobiDBLite consensus disorder prediction 1 31 - -
Gso3g2196 328 CDD Sina 163 291 - -
Gso3g2196 328 CDD RING-HC_SIAHs 47 85 - -
Gso3g2196 328 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 157 IPR013083 -
Gso3g2196 328 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 164 290 IPR008974 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g2196 Gso-Chr3 47132736 47139475 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g2196 1 297 C3H Transcription Factor Family AT2G41980 72.483 3.68e-162 452
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g2196 K04506 - gmx:100782764 630.943
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g2153 19 50019832 50023581 Gso3g2196 3 47132736 47139475 GST