Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g2193 ATGGAGCAGAAGAGGAGCAGTAGCAAGATGTACAACCTGTTTGTGAAGCACTTGGACGGGAAAACCCTAACCCTCCTATTCCCCTCTCCGATCCTCTACGCGAGTTCCATCAGGGATCGCCTCTTCCAACTCACCGGAATCCCCGCCCACCACCAGCGCCTTGTTACCGGCTGCCGCCACCTCAACGACGACAAATCTGCCATCCAATGCCTCCCGGAGGACGGCAACATGTTCCCCTCCGTGCGCCTCCTCCTGCGCCTCAAGGGCGGCAAGGGAGGCTTCGGCTCGCTTCTCCGTGGCGCCGCCACCAAGGCCGGGCAGAAGAAGACCAACAATTTCGACGCGTGCCGCGACATGAGTGGCCGGAGGCTGAGGCACGTCAACGCGGAGAAGAGGTTGGAGGAGTGGAAGGCCGGAGAACAGGAGAGGAAGCTCGAGAAGGTGGCCGAGGAGTTTCTCAAGAAGCAGATGAAGAAGGGAAAGGGTAAGGGTGAAGGTGAGGGTGGGGCTCAAAAATATGTCGCCAAATATAGGGAGGAATCTGAACGTTGTGTTGCCGAGGTTGCCTTGTCCGTTAAGGAGGCTCTCACTGCCAAGCGCAAGAGCCCTTCACAACCTCACCATGATGCTAAGAAATTGAAGATATGGATGGGGAAGAGGAAATTGAATGAAAGTGATAGTGATGATTCTGATGAAGAGGTGGAGATCGAGAAATCAGATTTGTTGAATGGTCCGAATGAGTCGGGCTCTAATAAGGCTGAGGGCAGTTTGGGTTCGGTAAATGGGGGCGGAGGCTCTTCTGGTGCTGGCTCGTGTGAAAGTGGGTCTGAAGAAGAGAAGGAAGCTGCTGTAGAAGGAAATGTGGGATCTGTTGCGATGCTGGGTGGTGAAAGTATTCAGGCTGCAGCTGAACCTGTGATAAATGATGAGGCTACTGAAATGCCAAAGGAGTCGGTGGTTGCTGGAATTAATGCTGAAGATAATGGATATCAGGATTGCTATGTAGGCGTGCCTGACAAGTTCGATGGTGCTGTGAATCAGGCCTCAACTGTTATGGGCTCTGAAACTGTCGCCAGTGCTGGTGAATCTAATTATATGGAAATTGATGGATCTCTTGAGCATAAAGCAGCAGTCAATGAAGAAAGCTCACCAAGCACTAGTGTTCCTGTGTTGGAGGAGCCCCTGAATTTTGATGCCTTTAATTCAGCTGCTGAACTTGAGGTTCTTGGCTTGGAAAGGTTGAAGTCTGAACTGCAGTCACGTGGGTTAAAATGTGGAGGTACTTTGAAGGAGCGTGCTGCCAGGCTTTTTCTTTTAAAATCAACTCCCCTGGATGAACTTCCAAAGAAGCTGCTTGCGAAGAAGTAA 1368 0.5146 MEQKRSSSKMYNLFVKHLDGKTLTLLFPSPILYASSIRDRLFQLTGIPAHHQRLVTGCRHLNDDKSAIQCLPEDGNMFPSVRLLLRLKGGKGGFGSLLRGAATKAGQKKTNNFDACRDMSGRRLRHVNAEKRLEEWKAGEQERKLEKVAEEFLKKQMKKGKGKGEGEGGAQKYVAKYREESERCVAEVALSVKEALTAKRKSPSQPHHDAKKLKIWMGKRKLNESDSDDSDEEVEIEKSDLLNGPNESGSNKAEGSLGSVNGGGGSSGAGSCESGSEEEKEAAVEGNVGSVAMLGGESIQAAAEPVINDEATEMPKESVVAGINAEDNGYQDCYVGVPDKFDGAVNQASTVMGSETVASAGESNYMEIDGSLEHKAAVNEESSPSTSVPVLEEPLNFDAFNSAAELEVLGLERLKSELQSRGLKCGGTLKERAARLFLLKSTPLDELPKKLLAKK* 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g2193 455 SUPERFAMILY Ubiquitin-like 6 75 IPR029071 -
Gso3g2193 455 Coils Coil 401 421 - -
Gso3g2193 455 Pfam Replication stress response SDE2 C-terminal 384 454 - -
Gso3g2193 455 Gene3D - 3 92 - -
Gso3g2193 455 MobiDBLite consensus disorder prediction 197 289 - -
Gso3g2193 455 CDD Ubl_ubiquitin_like 13 78 - -
Gso3g2193 455 PANTHER REPLICATION STRESS RESPONSE REGULATOR SDE2 10 454 - -
Gso3g2193 455 PANTHER SPLICING FACTOR SF3A-RELATED 10 454 - -
Gso3g2193 455 MobiDBLite consensus disorder prediction 200 227 - -
Gso3g2193 455 MobiDBLite consensus disorder prediction 243 273 - -
Gso3g2193 455 Pfam Silencing defective 2 N-terminal ubiquitin domain 11 156 IPR024974 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g2193 Gso-Chr3 47109077 47112529 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g2193 388 454 C2H2 Transcription Factor Family AT5G06160 43.284 4.36e-09 56.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g2148 19 49989663 49993278 Gso3g2193 3 47109077 47112529 GST