Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g2191 ATGAATGCAAAGGGACATAAATTTGTGAGGTTTGAGGACTGGAAATCAGAGTCATCTTTTAGTCCAGAGCAAGAAAATTCTATTAACAATGGGAATCACAAAAGAAGACCTAGTGTGGGTGCGGTTTTGAAGAGTATAGGAAGAAGGCTGGAGAGTGTGTCAGAGAAGATGAAGAACTTGACAAGAGCTTCAGCTGTCCATCCTGTAAGTGATGGAAAGAAAAAGCTTCCTCCTAGGAAGAAAATTCTTGATCCACAGGGTCCAATCCTTCAGAAATGGAACAAAATCTTTGTAATAACGTGTGTGATGGCAGTCTCTGTGGATCCTCTCTTCTTTTACATTCCGGTGATAAATAATGCTAGAAAACGTGTTGATTTGGATGGAGTATTGCAGATCACTGCCAGTGTTCTTCGCACCTTCTTTGATCTATTCTACATTCTTCGCATAATCTTCCAGTTTAAGACAGGATTCATTGCCCCTTCTTCTCGTGTTTTTGGAAGGGGTGAGCTCATTGATGATCCTATGGCTATAATGAAAAGATACTTAACTTCACACTTCATCATTGATGTTCTATCAATTATTCCACTTCCACAGGTGATTCTTTTAGCCATAAATCGAAACCTGAAAACATCAGATCCATTTGTAGCAAAGGATTTGTTGAAGTATTCAGTATTAATCCAGTATGTGCCAAGGCTTTTGCGGATCTATCCACTATTCAAAGAAGTAACTAGAACTTCTGGCATATTGACCGAGACAGCATGGGCTGGAGCTGCTTTTAATCTTTTTCTCTATATGCTGGCAAGTCATGTGGTTGGAGCTAACTGGTATATGCTTTCGGTAGAGTCAGAGGTGCGGTGCTGGCGAGAGTTAAAGAATGCTTCACTCTGTCATCGAGAATACATGAGTTGTGGAGACCGCAATCAAAAAAACTTTACACTTCTCAATCTTCTTAATCAGACACTATTGAATCAAACAGTTCTTAATCAAACTTGTTCTTTGGTTGACCCTGATACAATCAAAGACCCAAAAACCTTCAATTTTGGAATATTTTCTGATGCTCTAGATTCACATGTGGTAGAATCAACAACAGATTTTCCTCAGAAGTTCTTCTACTGCTTTTGGTGGGGTTTGCGCAATTTAAGTTCTCTTGGACAAAATCTCAAGACTAGTACTGATGTCTCAGAAATAGCCTTTGCAATCTTCATTGCCATCTTTGGATTGGTCTTATTCTCGTTACTTATTGGAAACATGCAGAAATATCTGCAATCTACAACTGTTAGAGTGGAGGAGATGAGAGTGAAGAGACAGGACGCGGAACAGTGGATGTCCCACCGTATGCTACCTGAGAACTTGAAGGAAAGAATTAGAAAGTACGAACAGTACCAATGGCAAGAAAATAAGGGTGTTGAGGAGGAGGCATTAATTCGTAACCTTCCTAAAGATCTCCGAAGGGACATAAAGCGTCACCTTTGCTTAGCTTTAGTTAAAAAAGTGCCAATGTTTGAGAAAATGGATGAGCAGTTGTTGGATGCAATGTGCGATAGACTGAAGCCAGTCCTTTACACTGAGAAGAGCTACATTGTTCGTGAAGAAGATCCAGTTGATGAGATGCTTTTCATTATGCGTGGAAAGGTTTCTACTATGACAACAAATGGTGGAAGAACTGGTTTCTTCAACTCCATGTTCCTCATGGCTGGTGACTTTTGTGGAGAGGAACTTCTGACATGGGCCTTGGATCCCAACTCCTCCTCAAATCTACCCATTTCAACTAGGACAGTAGAAACTATATCAGAAGTTGAAGCCTTTGCTCTCATGGCCGATGACTTGAAGTTTGTTGCTTCCCAATTTCGACGCCTTCACAGCAAACAGCTCCAACACGCTTTCAGGTTCTATTCCTCACAGTGGAAGACATGGGCTGCTACTTTCATACAAGCAGCTTGGCGTCGATACTGGAAAAAGAAGATTGAGAGGTCATTGTGCAAAGCAGAAGCAGACCTACAAGATGCTTTGGCAAATGAGGAAGGGTCTAGTCTAAGCCTTGGTGCAACCATATATGCATCAAGGTTTGCTGTCAATGCACTGCGAAACTTGAGAGAAAATAGCAGACACAATACAATGCAGCAGAGACTACTATCTCTGTTACCTCCAAAGCCAGCTGAGCCAGATTTCACTGCTCAGAAACACTAA 2187 0.4115 MNAKGHKFVRFEDWKSESSFSPEQENSINNGNHKRRPSVGAVLKSIGRRLESVSEKMKNLTRASAVHPVSDGKKKLPPRKKILDPQGPILQKWNKIFVITCVMAVSVDPLFFYIPVINNARKRVDLDGVLQITASVLRTFFDLFYILRIIFQFKTGFIAPSSRVFGRGELIDDPMAIMKRYLTSHFIIDVLSIIPLPQVILLAINRNLKTSDPFVAKDLLKYSVLIQYVPRLLRIYPLFKEVTRTSGILTETAWAGAAFNLFLYMLASHVVGANWYMLSVESEVRCWRELKNASLCHREYMSCGDRNQKNFTLLNLLNQTLLNQTVLNQTCSLVDPDTIKDPKTFNFGIFSDALDSHVVESTTDFPQKFFYCFWWGLRNLSSLGQNLKTSTDVSEIAFAIFIAIFGLVLFSLLIGNMQKYLQSTTVRVEEMRVKRQDAEQWMSHRMLPENLKERIRKYEQYQWQENKGVEEEALIRNLPKDLRRDIKRHLCLALVKKVPMFEKMDEQLLDAMCDRLKPVLYTEKSYIVREEDPVDEMLFIMRGKVSTMTTNGGRTGFFNSMFLMAGDFCGEELLTWALDPNSSSNLPISTRTVETISEVEAFALMADDLKFVASQFRRLHSKQLQHAFRFYSSQWKTWAATFIQAAWRRYWKKKIERSLCKAEADLQDALANEEGSSLSLGATIYASRFAVNALRNLRENSRHNTMQQRLLSLLPPKPAEPDFTAQKH* 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g2191 728 MobiDBLite consensus disorder prediction 15 38 - -
Gso3g2191 728 CDD CAP_ED 500 631 IPR000595 -
Gso3g2191 728 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 7 726 - -
Gso3g2191 728 ProSiteProfiles cAMP/cGMP binding motif profile. 500 584 IPR000595 -
Gso3g2191 728 Gene3D - 95 424 - -
Gso3g2191 728 SUPERFAMILY cAMP-binding domain-like 429 625 IPR018490 -
Gso3g2191 728 MobiDBLite consensus disorder prediction 20 34 - -
Gso3g2191 728 SMART cnmp_10 500 631 IPR000595 -
Gso3g2191 728 Coils Coil 43 63 - -
Gso3g2191 728 Gene3D Jelly Rolls 498 618 IPR014710 -
Gso3g2191 728 Gene3D Helix hairpin bin 427 491 - -
Gso3g2191 728 SUPERFAMILY Voltage-gated potassium channels 84 422 - -
Gso3g2191 728 Pfam Ion transport protein 93 428 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Gso3g2191 728 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 7 726 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g2191 Gso-Chr3 47094677 47099201 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g2191 1 725 Ion Channels AT5G53130 63.525 0.0 920
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g2191 K05391 - gmx:100816236 1416.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g2146 19 49974531 49987252 Gso3g2191 3 47094677 47099201 GST
Gso3g2191 3 47094677 47099201 Gso16g0208 16 2431019 2438639 PCT
Gso16g0208 16 2431019 2438639 Gso3g2191 3 47094677 47099201 PCT