Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g2176 ATGGAAGCTAGATTCAGTGAGCAGAAGGTTGTCACTTACAAACATGTCAAACCTGGTGACATTTTGAATGCAGCACCAAAGGTAGTTCGGATTTCTGTGATGGATCCCTATGCCACAGATGACGAAGATGAAGATGAAGGGTTGGTTATTCATCCTAGAATGAAGAAGTTTGTGAATGAAATCAGAATTGTGGAGAAGAAGAGTTCAACTAACTGTGAGTCTGCAGGTGTAAATCGTACTAGTAATGTGTCGCTGAGACAGCATTACAAGGGAAAAACTGGAGATAGTCTTGAAAAAAAGAGGCTTAGAGGAGTTCGTCAAAGGCCATGGGGAAGATGGGCAGCAGAAATCAGAGATCCTGTGAAGCGAATAAGGGTGTGGTTAGGGACTTATGACACTGCTGAAGAAGCTGCTATGGTTTATGACAAAGCAGCCATTGCCTTTAGAGGCTCTAAAGCTCTCACTAATTTCATCAAGCCTCCTACAAGGGAAGATCTTTGTGATTGTGGCCCTAATGAAACTGAGGCTAGTGTGGCTGTGAGTGGTGAGAATGATTCAAGTGAAGAGTCTCATTTGTCTTCACCTACTTCTGTGCTTGGACTTCAATCTGTGGAACTTATGTTGGAGGAGGTTTCTGAAACAGATCTTCCAAGCAAAGAAGAGTCAAGTTCTCAAGACAGCTTCTTGTTTTTAGATTCACATTCATCGTCCATTGATTGTTATTTCAATTTTGAAACTCTTCCACCAGTGTTTCTTCATGAAACTAGCATAACACAGCAGCCTGATTTCCATGACAAATTCAGTGACATTTCCCATCTTGTCAATGAGGATTTTCAATCATGGAATTGGGATATAGATAGTTACTTCAGTGATCCTTTGTTGATCTGA 888 0.411 MEARFSEQKVVTYKHVKPGDILNAAPKVVRISVMDPYATDDEDEDEGLVIHPRMKKFVNEIRIVEKKSSTNCESAGVNRTSNVSLRQHYKGKTGDSLEKKRLRGVRQRPWGRWAAEIRDPVKRIRVWLGTYDTAEEAAMVYDKAAIAFRGSKALTNFIKPPTREDLCDCGPNETEASVAVSGENDSSEESHLSSPTSVLGLQSVELMLEEVSETDLPSKEESSSQDSFLFLDSHSSSIDCYFNFETLPPVFLHETSITQQPDFHDKFSDISHLVNEDFQSWNWDIDSYFSDPLLI* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g2176 295 MobiDBLite consensus disorder prediction 177 197 - -
Gso3g2176 295 PRINTS Ethylene responsive element binding protein signature 102 113 IPR001471 GO:0003700|GO:0006355
Gso3g2176 295 PRINTS Ethylene responsive element binding protein signature 124 140 IPR001471 GO:0003700|GO:0006355
Gso3g2176 295 CDD AP2 100 157 IPR001471 GO:0003700|GO:0006355
Gso3g2176 295 Pfam AP2 domain 102 150 IPR001471 GO:0003700|GO:0006355
Gso3g2176 295 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF5-RELATED 3 291 - -
Gso3g2176 295 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 3 291 - -
Gso3g2176 295 SMART rav1_2 101 164 IPR001471 GO:0003700|GO:0006355
Gso3g2176 295 ProSiteProfiles AP2/ERF domain profile. 101 158 IPR001471 GO:0003700|GO:0006355
Gso3g2176 295 Gene3D AP2/ERF domain 100 159 IPR036955 GO:0003700|GO:0006355
Gso3g2176 295 PIRSF PTI6 2 248 IPR017392 GO:0003700
Gso3g2176 295 SUPERFAMILY DNA-binding domain 102 157 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g2176 Gso-Chr3 46973743 46974630 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g2176 3 295 AP2-EREBP Transcription Factor Family AT4G27950 34.650 5.54e-45 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso3g2176 AP2 4.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g2176 - - gmx:100814120 565.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g2130 19 49831504 49832385 Gso3g2176 3 46973743 46974630 GST