Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g2171 ATGGGAAACAGTGAGGAAGAGAAATCTACTAAGACTGAAAAGCCTTCTTCACCTGTAACAATGGATCAGGCGAATCAGACCAACCAGACCAATATTCATGTCTATCCTGATTGGGCAGCCATGCAGGCATATTATGGGCCAAGAGTCACCATGCCACCATACTACAACTCAGCTGTTGCTTCTGGTCACGCTCCTCACCCGTACATGTGGGGGCCACCACAGGTACCTATGATGCCACCTTATGGGCCTCCTTATGCAGCAATTTATCCACATGGAGGGGTTTATACTCACCCTGCAGTTCCTATTGGGCCACTTACACATAGTCAAGGAGTTCCATCTTCACCTGCTGCTGGGACTCCTTTGAGCATAGAGACACCACCCAAATCATCTGGAAATACTGATCAGGGTTTAATGAAGAAATTGAAAGAGTTTGATGGACTTGCAATGTCAATTGGCAATGGCCATGCTGAAAGTGCAGAGCGTGGAGGTGAAAACAGGCTCTCACAGAGTGTGGATACTGAGGGTTCCAGTGATGGAAGTGATGGCAACACTTCAGGGGCTAATCAATCAAGAAGGAAAAGAAGCCGTGAGGGAACACCAACCACTGATGGAGAAGGGAAAACTGAGATACAAGGCAGTCCAATTTCCAAAGAGACTGCAGCTTCTAATAAGATGTTGGGAGTTGTCCCTGCCAGTGTTGCAGGAACAATAGTTGGACATGTAGTTTCTTCAGGTATGACCACTGCACTGGAGCTGAGAAATCCTTCCAGTGTTCATTCTAAAACAAGTGCCCCACAACCTTGTCCAGTATTGCCTGCAGAAGCTTGGGTACAGAATGAGCGTGAGCTGAAACGGGAGAGGCGGAAACAGTCAAATCGAGAATCTGCTAGAAGGTCCAGACTAAGGAAGCAGGCTGAAACTGAAGAACTGGCACGAAAAGTTGAATCCTTGAATGCTGAGAATGCAACACTGAAATCAGAAATTAATCGACTGACTGAAAGTTCTGAAAAAATGAGGGTGGAAAATGCTACATTAAGGGGAAAACTTAAAAATGCTCAACTGGGACAAACCCAAGAGATAACTTTGAAGATAATTGACAGCCAGAGGGCTACACCTGTAAGTACAGAAAACTTATTATCAAGAGTTAATAATTCCGGTTCTAATGATAGAACTGTGGAGGATGAGAATGGTTTTTGCGAAAATAAACCAAACTCTGGTGCAAAGCTGCATCAACTGCTGGACACAAGTCCTAGAGCTGATGCTGTGGCAGCTGGTTGA 1278 0.4531 MGNSEEEKSTKTEKPSSPVTMDQANQTNQTNIHVYPDWAAMQAYYGPRVTMPPYYNSAVASGHAPHPYMWGPPQVPMMPPYGPPYAAIYPHGGVYTHPAVPIGPLTHSQGVPSSPAAGTPLSIETPPKSSGNTDQGLMKKLKEFDGLAMSIGNGHAESAERGGENRLSQSVDTEGSSDGSDGNTSGANQSRRKRSREGTPTTDGEGKTEIQGSPISKETAASNKMLGVVPASVAGTIVGHVVSSGMTTALELRNPSSVHSKTSAPQPCPVLPAEAWVQNERELKRERRKQSNRESARRSRLRKQAETEELARKVESLNAENATLKSEINRLTESSEKMRVENATLRGKLKNAQLGQTQEITLKIIDSQRATPVSTENLLSRVNNSGSNDRTVEDENGFCENKPNSGAKLHQLLDTSPRADAVAAG* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g2171 425 Pfam Disordered region downstream of MFMR 134 263 - -
Gso3g2171 425 CDD bZIP_plant_GBF1 285 333 IPR045314 GO:0003700|GO:0006355
Gso3g2171 425 Gene3D - 283 338 - -
Gso3g2171 425 MobiDBLite consensus disorder prediction 383 425 - -
Gso3g2171 425 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 282 345 IPR004827 GO:0003700|GO:0006355
Gso3g2171 425 MobiDBLite consensus disorder prediction 154 216 - -
Gso3g2171 425 MobiDBLite consensus disorder prediction 1 28 - -
Gso3g2171 425 Coils Coil 300 341 - -
Gso3g2171 425 MobiDBLite consensus disorder prediction 163 189 - -
Gso3g2171 425 SMART brlzneu 280 344 IPR004827 GO:0003700|GO:0006355
Gso3g2171 425 PANTHER G-BOX-BINDING FACTOR 3 1 425 - -
Gso3g2171 425 PANTHER G-BOX-BINDING FACTOR 3-RELATED 1 425 IPR044827 GO:0003700|GO:0006355|GO:0043565
Gso3g2171 425 MobiDBLite consensus disorder prediction 107 136 - -
Gso3g2171 425 SUPERFAMILY Leucine zipper domain 283 338 IPR046347 GO:0003700|GO:0006355
Gso3g2171 425 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 287 302 IPR004827 GO:0003700|GO:0006355
Gso3g2171 425 MobiDBLite consensus disorder prediction 105 136 - -
Gso3g2171 425 MobiDBLite consensus disorder prediction 14 28 - -
Gso3g2171 425 Pfam G-box binding protein MFMR 1 101 IPR012900 -
Gso3g2171 425 Pfam bZIP transcription factor 280 342 IPR004827 GO:0003700|GO:0006355
Gso3g2171 425 MobiDBLite consensus disorder prediction 281 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g2171 Gso-Chr3 46935609 46941784 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g2171 1 425 bZIP Transcription Factor Family AT2G46270 52.914 5.50e-126 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Gso3g2171 MFMR_assoc 1.3e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g2171 K09060 - gmx:778133 812.757
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g2125 19 49790716 49796714 Gso3g2171 3 46935609 46941784 GST